Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq10 504 2e-138 >seq10 Length=19274048 Score = 504 bits (558), Expect = 2e-138 Identities = 696/965 (72%), Gaps = 29/965 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||| ||| |||||||| ||||| | ||||| || Sbjct 17611048 AGCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATT 17610989 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 17610988 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 17610931 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| |||||||| || ||||| ||||||||||| || || | || || Sbjct 17610930 -GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 17610872 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||| |||||||||| |||| | | ||||| Sbjct 17610871 GAACCAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 17610812 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 ||| |||||||| |||||||| || |||||||| || ||||||||||| Sbjct 17610811 AAAACTAGCATATTGGAAGAT-------------TAACCATGAGCGGCCACAATATTATA 17610765 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||| | || || | || ||| || ||||| ||||| Sbjct 17610764 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 17610705 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| | || ||||||||| ||||| | || || Sbjct 17610704 CCTGATCAAACTAGAGGT--TACCAAG-CAACCATGCATAGCACTGAATAGGGAACCGCC 17610648 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || ||||| | ||| || || |||||||||||||| || || || || || Sbjct 17610647 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 17610588 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | ||||||||||||| ||||||| Sbjct 17610587 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACT 17610528 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| |||| ||| |||| | ||||| || | || || ||||||| || || || ||| Sbjct 17610527 TCCTTGACCAATAGGGTAAATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCTGAA 17610470 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| || |||||||| || | |||| |||||||| | || ||| Sbjct 17610469 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCC 17610410 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 || ||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 17610409 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 17610350 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 ||||||||||| || | | |||||||||||| |||||||| ||||| | |||| || Sbjct 17610349 TATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCA 17610290 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 ||| | || || || | || || || || |||||||| || ||||| | || || Sbjct 17610289 GCAGAAGTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAA 17610230 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 |||||||||||||||||||| || || || ||||| ||||| | || || || | |||| Sbjct 17610229 ACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAAT 17610170 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | | || |||||| || | | ||||||||| | || |||||||| || | ||| || Sbjct 17610169 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 17610110 Query 18786 CGGTT 18790 ||||| Sbjct 17610109 CGGTT 17610105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318378437128