Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 122 4e-23 seq6 91.5 7e-14 >seq2 Length=31686972 Score = 122 bits (134), Expect = 4e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || ||||| |||||||| || || | |||||| ||||||||||| || Sbjct 30270811 TACCTTTTCTCTTGCCTCCGCCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCA 30270752 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | ||| | || ||| ||||| | |||| | || || | || Sbjct 30270751 GCATGGGAACAATCCCATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTC 30270692 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 |||||| |||| ||| | ||| ||||||||||| ||||| || | ||||| ||| Sbjct 30270691 TAATATTGTGAAT-TGAGAGACCAATTCCACCAGCACATTTGCTTATGGTAGCACATTCT 30270633 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | ||||||||| ||||||| Sbjct 30270632 GAGAGAGTATCATAAATTCCCTCAATGCTATCATCTTTCAT 30270592 >seq6 Length=25711811 Score = 91.5 bits (100), Expect = 7e-14 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 26060 AAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACT 26119 || ||||| ||||| || |||||||||||||| || || | ||||| ||||||||||| Sbjct 3088181 AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACA 3088240 Query 26120 TTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTC 26179 | ||| ||||| | ||| | || ||| ||||| | | | || | | || || Sbjct 3088241 CGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTA 3088300 Query 26180 GATCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 | || ||||| |||| | ||| | ||| ||||| ||||| |||| || | ||||| Sbjct 3088301 GCTCGAATATTGTGAAC-TGATACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACA 3088359 Query 26239 ATC--TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||| ||||| | ||||| | ||||| ||| ||||||| Sbjct 3088360 TTCCTTCAAA--GTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3088404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039962992900