Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq10 535 6e-147 seq2 93.3 6e-14 >seq10 Length=19274048 Score = 535 bits (592), Expect = 6e-147 Identities = 695/961 (72%), Gaps = 15/961 (2%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 || ||| || || | || || || || || | | |||||| || || || | ||||| Sbjct 17611051 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAG 17610992 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 17610991 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 17610932 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| ||||| ||||| |||||||||||||| || | ||| | || || Sbjct 17610931 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 17610872 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||| || || || || ||||| ||| | | ||||||||| || ||||| |||||||| Sbjct 17610871 GAACCAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 17610812 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 || ||||||||||||||| || ||||| || || || || || || Sbjct 17610811 AAAACTAGCATATTGGAAGATTAA-------------CCATGAGCGGCCACAATATTATA 17610765 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 |||||||| |||||||| || | ||||| | || || || ||||||| || || Sbjct 17610764 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 17610705 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| | || ||||||||| ||| || || || ||||| Sbjct 17610704 CCTGATCAAACTAGAGGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCGAA 17610645 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || || ||||||||||| || || ||||||||||| Sbjct 17610644 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAA 17610585 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| ||| |||| ||||||||||| || || | ||||||| |||| ||||| || Sbjct 17610584 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCC 17610525 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||| | ||| || | | ||| || ||| | ||||| || || ||||| |||||||| Sbjct 17610524 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 17610465 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| ||||||||||| | ||| | |||||||||||||| |||||||| Sbjct 17610464 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 17610405 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | || | || | ||||||| || || || || Sbjct 17610404 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 17610345 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||||||||| | ||||| |||||||| |||||||| ||||| | |||| ||| || Sbjct 17610344 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGA 17610285 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || |||| | |||||| || || ||||| || || | | ||||||| ||| || Sbjct 17610284 AGTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 17610225 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 ||||||||||| |||||||| || || || || |||||||| |||| ||| || |||| Sbjct 17610224 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 17610165 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||| ||||| |||| || | ||||| Sbjct 17610164 -AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 17610106 Query 27689 T 27689 | Sbjct 17610105 T 17610105 >seq2 Length=31686972 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23802 CCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAG 23861 ||||||||||| | || || || | || | || |||||||||||||||||||| || Sbjct 31659824 CCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCAGCAACTCCCATCATATGAAAT 31659765 Query 23862 GGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGC 23920 ||||| | |||||| |||||||| || |||| |||||| | ||| | || ||||| || Sbjct 31659764 GGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGC 31659706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494300175840