Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=25711811 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 7420947 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 7420888 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 7420887 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 7420828 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 7420827 GCTCATCTCCCGCGACGAGGGCCTGCAC 7420800 Score = 104 bits (114), Expect = 3e-17 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || || || ||||| || Sbjct 25372100 GGGGCCAAGATCCCCAAGGGATGCCTGCTCGTCGGCCCGCCCGGAACCGGGAAGACACTG 25372041 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || |||||| || ||| | || | | Sbjct 25372040 CTGGCGCGTGCCGTCGCCGGGGAGGCCGGAGTGCCATTCTTCTCCTGCGCCGCGTCCGAG 25371981 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| |||||| ||||| | || || || || | ||| Sbjct 25371980 TTCGTTGAGCTGTTCGTCGGTGTCGGTGCCTCCAGGGTCAGGGACCTGTTCGAGAAGGCC 25371921 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||||||||| |||||||| || || | ||| || Sbjct 25371920 AAGGCCAAGGCCCCTTGCATCGTCTTCATTGATGAAATTGATGCCGTCGGGAGGCAGCGT 25371861 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| | | | | | |||||| ||||| || || || ||||| || || | | Sbjct 25371860 GGTGCTGGGCTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATTAACCAGCTCTTGA 25371803 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 25371802 CTGAGATGGATGGATTTG 25371785 Score = 102 bits (112), Expect = 1e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || |||||| ||||||| |||||||| | | || Sbjct 22733258 TTTGTGGAGATGTTTGTCGGAGTTGGTGCCTCCCGGGTTCGTGATCTCTTCAAGAAGGCA 22733199 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 22733198 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 22733139 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||| | || || Sbjct 22733138 GGGACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAATCAGTTGCTGACT 22733079 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 22733078 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCT 22733019 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| || | || | || || |||||||| Sbjct 22733018 GATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGA 22732978 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 ||||| || ||||||||||| || | ||| | |||||||| || |||||||| ||||| Sbjct 1225210 TTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTC 1225269 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||||| || || || || ||||| || |||||||||||| Sbjct 1225270 ACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCAC 1225311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560