Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08]
12 sequences; 308,272,304 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq10 497 1e-135
>seq10
Length=19274048
Score = 497 bits (550), Expect = 1e-135
Identities = 682/956 (71%), Gaps = 13/956 (1%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| ||||||||||| |||| | ||| ||||| ||||||||||| | ||
Sbjct 17611047 GCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATTA 17610988
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | ||| | |||||| || |||
Sbjct 17610987 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 17610928
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || |||||||| || || || ||||| || | |||||| | || ||| |||
Sbjct 17610927 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 17610868
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130
|||| | ||| || || | | | | | ||||||||| | | | | |||||||||
Sbjct 17610867 CAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 17610808
Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190
||||| ||||||||||| |||||||| || ||||||||||| |||
Sbjct 17610807 CTAGCATATTGGAAGATTAA-------------CCATGAGCGGCCACAATATTATAAGTC 17610761
Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250
||||| ||||||||||| | ||||| | || ||| || | |||||| || || |||
Sbjct 17610760 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 17610701
Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310
|| | | ||| || || || |||| |||||||||||||| || || || ||||| | |
Sbjct 17610700 ATCAAACTAGAGGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 17610641
Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370
|| ||||| ||| ||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 17610640 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 17610581
Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430
| ||| ||||| || |||||||| || |||| |||||| |||||| |||| || |||
Sbjct 17610580 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTGA 17610521
Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490
|||| || || | ||||| || || |||||| | || ||||| |||||| |||
Sbjct 17610520 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 17610461
Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550
||||| || | |||||| | ||| | | ||||||| | |||||| ||| |
Sbjct 17610460 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 17610401
Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610
| | |||| | |||||| | | || | || ||| ||||| || || || ||||||
Sbjct 17610400 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 17610341
Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670
||||| | | |||||||||||||| || || ||||| ||||| | || ||||
Sbjct 17610340 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGAAGTA 17610281
Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730
||||| | | ||||||||| || |||||||| || | || ||||| | |||||| |||
Sbjct 17610280 GGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 17610221
Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790
|||||||| || ||||| || || || ||||| || || || | ||||| || ||
Sbjct 17610220 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 17610161
Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846
|| | || ||| ||| ||||| | ||| |||||||| || | ||||| | |||
Sbjct 17610160 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 17610105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615862307620640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |