Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq10 497 1e-135 >seq10 Length=19274048 Score = 497 bits (550), Expect = 1e-135 Identities = 682/956 (71%), Gaps = 13/956 (1%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| |||| | ||| ||||| ||||||||||| | || Sbjct 17611047 GCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATTA 17610988 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 17610987 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 17610928 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| || || || ||||| || | |||||| | || ||| ||| Sbjct 17610927 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 17610868 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| | ||| || || | | | | | ||||||||| | | | | ||||||||| Sbjct 17610867 CAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 17610808 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||||| ||||||||||| |||||||| || ||||||||||| ||| Sbjct 17610807 CTAGCATATTGGAAGATTAA-------------CCATGAGCGGCCACAATATTATAAGTC 17610761 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| ||||||||||| | ||||| | || ||| || | |||||| || || ||| Sbjct 17610760 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 17610701 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || || || |||| |||||||||||||| || || || ||||| | | Sbjct 17610700 ATCAAACTAGAGGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 17610641 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 17610640 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 17610581 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||| ||||| || |||||||| || |||| |||||| |||||| |||| || ||| Sbjct 17610580 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTGA 17610521 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 |||| || || | ||||| || || |||||| | || ||||| |||||| ||| Sbjct 17610520 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 17610461 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| | Sbjct 17610460 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 17610401 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | |||| | |||||| | | || | || ||| ||||| || || || |||||| Sbjct 17610400 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 17610341 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 ||||| | | |||||||||||||| || || ||||| ||||| | || |||| Sbjct 17610340 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGAAGTA 17610281 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 ||||| | | ||||||||| || |||||||| || | || ||||| | |||||| ||| Sbjct 17610280 GGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 17610221 Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790 |||||||| || ||||| || || || ||||| || || || | ||||| || || Sbjct 17610220 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 17610161 Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| Sbjct 17610160 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 17610105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615862307620640