Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq10 520 1e-142 seq9 87.8 2e-12 seq2 82.4 9e-11 >seq10 Length=19274048 Score = 520 bits (576), Expect = 1e-142 Identities = 699/973 (72%), Gaps = 15/973 (2%) Strand=Plus/Plus Query 165784 ACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTG 165843 || ||||| | |||||||| || | || ||||||||| ||||||| || || | Sbjct 17610093 ACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 17610152 Query 165844 TTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGA 165902 ||| | |||||| |||| || || |||||||||||||||| || || || || || || Sbjct 17610153 TTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGA 17610211 Query 165903 CGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGC 165962 || || ||||| || || |||||||| | | || || ||||| || ||||||||| | Sbjct 17610212 TGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTAC 17610271 Query 165963 AGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATC 166022 ||||||| |||| || | || | ||||| || || || |||||||| ||||| Sbjct 17610272 CATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATC 17610331 Query 166023 GCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGAT 166082 |||| || ||| | || || || ||||||| | || |||| | |||||| | | Sbjct 17610332 TGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 17610391 Query 166083 TGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCC 166142 ||| | | || ||||||||||||||||||||| || |||||| ||||||||||| Sbjct 17610392 TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCC 17610451 Query 166143 ATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATA 166202 ||||| |||||| || ||||| || || || ||||| | ||| || ||| | | || Sbjct 17610452 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 17610511 Query 166203 TCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAA 166262 ||| | |||||||| ||||||| ||||| ||||| | ||||| || || || ||||| Sbjct 17610512 CCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 17610571 Query 166263 CTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGG 166322 || ||| | || ||||| || ||||| || || || |||||||| || || ||| | || Sbjct 17610572 CTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGG 17610631 Query 166323 CGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTC 166382 || ||||| ||||| || || | || ||||||||||| || | ||||| || || Sbjct 17610632 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTC 17610691 Query 166383 TTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACA 166442 | | | | || || || ||||||| |||||| || | ||||||| || || || Sbjct 17610692 TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCA 17610751 Query 166443 AGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCA 166502 ||| ||||| || || || || || |||||||||||||| |||||||| Sbjct 17610752 AGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCA 17610798 Query 166503 ATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGT 166562 ||| ||| || |||||||| || || || ||||||||| | | ||| |||||||| || Sbjct 17610799 ATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGT 17610858 Query 166563 CGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAA 166622 || || |||||||| || | || | || ||||| ||||| || ||||| ||||| Sbjct 17610859 AGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAA 17610918 Query 166623 CTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCT 166682 |||||||| || | ||||| | || ||||| || | || || ||||| ||| | | Sbjct 17610919 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 17610978 Query 166683 TAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCT 166742 ||||| ||| ||| ||||||||||| ||||| || ||| | || ||||||||||| || Sbjct 17610979 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCT 17611038 Query 166743 CGACCTCGCTGCT 166755 ||||| ||| || Sbjct 17611039 AGACCTAGCTACT 17611051 >seq9 Length=19219615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||| ||| Sbjct 3549466 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 3549525 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 3549526 CCTACTTGGGGAG 3549538 >seq2 Length=31686972 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 167497 GCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCA 167556 || || || || |||||| |||||||| |||||||||| || || ||||| |||| ||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 167557 TTTCATATGATGGGTGTAGCAGG 167579 |||||||||||||| || || || Sbjct 31659766 TTTCATATGATGGGAGTTGCTGG 31659788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561247915812800