Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq10 499 9e-137 seq2 87.8 5e-13 >seq10 Length=19274048 Score = 499 bits (552), Expect = 9e-137 Identities = 687/958 (72%), Gaps = 17/958 (2%) Strand=Plus/Plus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTAC 42374 ||||||||||| |||| ||||||||||| ||||||| |||| || | | | || || Sbjct 17610105 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCCTACCTTATTGACCGCAAC 17610163 Query 42375 CACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTG 42433 | ||| |||||| |||| ||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 17610164 TTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 17610222 Query 42434 AACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA 42493 | ||||| ||||| ||| | || || || ||||| || ||||||||| || | || |||| Sbjct 17610223 AGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTA 17610282 Query 42494 GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAAT 42553 | || | ||| | || || || | || |||||||| | |||| || | Sbjct 17610283 CTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 17610342 Query 42554 GGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCT 42613 || | ||||||||||| |||||| |||| | || | |||||| | | ||| | | Sbjct 17610343 GGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 17610402 Query 42614 CTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTG 42673 ||| |||| || || |||||||| | ||| || || ||| | || ||||| || Sbjct 17610403 GTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 17610462 Query 42674 TTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGC 42733 |||| || || || ||||| || || || ||||| || ||| | | || || |||| | Sbjct 17610463 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTC 17610522 Query 42734 AAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGG 42793 |||| ||| | ||||| |||||| | || || || ||||| |||||||| ||| | | Sbjct 17610523 AAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTG 17610582 Query 42794 TCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCG 42853 | |||||||| || |||||||| ||||||||||| || || ||| | ||||| || || | Sbjct 17610583 TATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTG 17610642 Query 42854 TATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGC 42913 |||| || || || | ||| |||||||||||| | | || |||||| | | | Sbjct 17610643 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCA 17610702 Query 42914 GTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGA 42973 | ||||| |||||||||||| ||| | || |||| || ||||||||||| |||| Sbjct 17610703 GGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGA 17610762 Query 42974 CTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGT 43033 ||||||| ||||| || || |||||||| |||||||||||||| | Sbjct 17610763 CTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTT 17610809 Query 43034 TTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGT 43093 |||| || ||| ||||| |||||||| | | |||||||| || || |||||||||| Sbjct 17610810 TTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGT 17610869 Query 43094 TCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAAT 43153 ||||| || | || | ||||||||||| || || | || || || || || ||||||| Sbjct 17610870 TCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAAT 17610929 Query 43154 CACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCA 43213 | | ||||||| || || || || ||||||||||||||| | || ||||| | Sbjct 17610930 CTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTA 17610989 Query 43214 ACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | ||||| | || || |||||||| || |||| || |||||||| || || || || Sbjct 17610990 ATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGC 17611047 >seq2 Length=31686972 Score = 87.8 bits (96), Expect = 5e-13 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 43086 GATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTT 43145 ||||||||||||| || | || | || |||||||| || || | ||||| || || || Sbjct 14358971 GATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTT 14358912 Query 43146 TAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAA 43205 ||||| || | ||||||| || || || || ||||||||||||||| | || Sbjct 14358911 CAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAA 14358853 Query 43206 TCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACA 43250 ||||| || |||| | || || |||||||| || ||||| || Sbjct 14358852 CCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14358808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532779546576