Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq10 453 3e-123 >seq10 Length=19274048 Score = 453 bits (502), Expect = 3e-123 Identities = 684/970 (71%), Gaps = 17/970 (2%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||| ||| |||||||| ||||| | || || ||| Sbjct 17611047 GCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATTA 17610988 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 17610987 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 17610929 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 17610928 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 17610869 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| | | | ||||| || | |||||| ||| ||||| Sbjct 17610868 CCAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 17610809 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||| || || || || ||||||||||| || Sbjct 17610808 ACTAGCATATTGGAAGATTAA-------------CCATGAGCGGCCACAATATTATAAGT 17610762 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 17610761 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 17610702 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| | || ||||||||| ||| || | || ||||| || Sbjct 17610701 GATCAAACTAGAGGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 17610642 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 17610641 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 17610582 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 17610581 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTG 17610522 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | ||| |||| ||||| || || ||| || | | || |||| ||||||||| Sbjct 17610521 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 17610462 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 17610461 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 17610402 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 17610401 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 17610342 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 ||| || | | |||||||||| || |||||||| || | ||||| || ||| | Sbjct 17610341 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGAAGT 17610282 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || || | | || || || |||||||||||||| | ||| || || ||||| ||||| Sbjct 17610281 AGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 17610222 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | || Sbjct 17610221 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 17610163 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || || |||||||| | || |||||||| | Sbjct 17610162 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 17610103 Query 26835 CAGTACTTGT 26844 | || || || Sbjct 17610102 CGGTGCTAGT 17610093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711978951040