Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq10 545 3e-150 seq8 95.1 1e-14 seq2 89.7 6e-13 >seq10 Length=19274048 Score = 545 bits (604), Expect = 3e-150 Identities = 702/967 (73%), Gaps = 21/967 (2%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | | || Sbjct 17610102 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCA 17610161 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||| ||||| ||||| ||||| ||||||||||||||| Sbjct 17610162 ACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 17610221 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 || || || ||||||||||| | || || ||||| || ||||||||| | |||| ||| Sbjct 17610222 GAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCT 17610281 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || | || | ||||| || || ||||||||||| ||| || |||||||| Sbjct 17610282 ACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAG 17610341 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| |||||||| ||||||| | || | || | |||||| | | || | | Sbjct 17610342 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---A 17610398 Query 155293 GCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATC 155349 || | | | |||||| |||||||||| || |||||| || |||||||||||||| Sbjct 17610399 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 17610458 Query 155350 TGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTC 155409 ||||||||| || || || || | ||||| ||||| ||| | |||| ||| | Sbjct 17610459 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 17610518 Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| ||||| ||||| |||||| | || || ||||||||||| |||| |||| Sbjct 17610519 GGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 17610578 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA 155529 | || ||||| ||||| || || ||||||||||| || || |||||| | || ||||| Sbjct 17610579 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 17610638 Query 155530 GGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTA 155589 ||||| ||||| || || || ||| ||||||||| |||| ||||| || ||| | Sbjct 17610639 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTG 17610698 Query 155590 ATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 155649 ||| | ||||| ||||| | || ||| || | ||||||| || || ||||| ||| Sbjct 17610699 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 17610758 Query 155650 GAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCA 155709 || |||||||| ||||| || |||||||| || |||||||| ||||| Sbjct 17610759 GAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCT 17610805 Query 155710 TCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATC 155769 || |||||||| | | | ||||||||| | | ||| |||||||| || | || Sbjct 17610806 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATT 17610865 Query 155770 TGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAAC 155829 ||| |||||| | ||| | || ||||| ||||| || ||||| ||||| |||||| Sbjct 17610866 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 17610925 Query 155830 CAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCG 155888 || |||||||| || || | ||| || || ||| ||||| || || | ||||| Sbjct 17610926 CAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCG 17610984 Query 155889 CGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCT 155948 ||| |||||||||||||||||||||||| ||| | ||||||||||||||||| ||||| Sbjct 17610985 TGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCT 17611044 Query 155949 TGCTGCT 155955 ||| || Sbjct 17611045 AGCTACT 17611051 >seq8 Length=22678724 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 155884 AACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTT 155943 |||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 21568425 AACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 21568366 Query 155944 GACCTTGCTGCT 155955 ||||| |||||| Sbjct 21568365 GACCTAGCTGCT 21568354 >seq2 Length=31686972 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 14358961 ACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTCAACCA-TCT 14358903 Query 155836 GTAGTAGAC-GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGG 155894 ||||| || || | ||| || || ||| ||||| || || | ||||| || Sbjct 14358902 GTAGTTGATAGCCAA-GGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAA 14358844 Query 155895 TCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934 ||||| |||||||||||||||||| ||||| |||||| || Sbjct 14358843 TCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584835112274720