Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq10 468 1e-127 seq2 87.8 5e-13 seq8 84.2 6e-12 >seq10 Length=19274048 Score = 468 bits (518), Expect = 1e-127 Identities = 692/975 (71%), Gaps = 19/975 (2%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| | ||| |||||||||||||||||||| || Sbjct 17611051 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAG 17610992 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 17610991 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 17610933 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || || || |||||||||||| ||||| | | | Sbjct 17610932 CAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAG 17610873 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| |||||||| | ||| ||| Sbjct 17610872 TGAACCAAATCCCTACTACAGGCCAAGCATCCAAGAA-GAAGTGTAAAGAACGAGAGTTG 17610814 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| ||| || || || || || ||| Sbjct 17610813 TTAAAACTAGCATATTGGAAGATTA-------------ACCATGAGCGGCCACAATATTA 17610767 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || ||||| |||| ||||| Sbjct 17610766 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTT 17610707 Query 40887 TCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCA 40946 |||| || | || || || | || || ||||||||| || | | ||| || Sbjct 17610706 TCCCTGATCAAACTAGAGGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCG 17610647 Query 40947 AAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGG 41006 || || || || || || | ||| || ||||| ||||| || ||||| || ||||| ||| Sbjct 17610646 AATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGG 17610587 Query 41007 AAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAA 41066 || |||| ||| |||||||| || ||| ||||||||||||||||||||| ||||| Sbjct 17610586 AATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTT 17610527 Query 41067 CCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTAT 41126 || ||||| | || |||| ||||| ||||| ||| |||| | ||||||| ||| Sbjct 17610526 CCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATAT 17610467 Query 41127 GCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCG 41186 || ||| ||||| || | |||||| || | | | |||||||||| | ||| Sbjct 17610466 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATA 17610407 Query 41187 TATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTAT 41246 || ||||| || | ||| ||||| | ||||| || | ||| || ||||| |||||| Sbjct 17610406 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTAT 17610347 Query 41247 AGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTA 41306 | |||||| || | | | |||||||| |||||||| || || | ||||| || | Sbjct 17610346 AACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCA 17610287 Query 41307 GAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACG 41366 || | ||||| | | ||||| ||||||||||| ||||| | ||| || || ||||| Sbjct 17610286 GAAGTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACA 17610227 Query 41367 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACA 41425 |||||||| || ||||| |||||||| || || || ||||| |||||||| || || ||| Sbjct 17610226 GGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA 17610167 Query 41426 TGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCG 41485 | || || || | ||| | || ||||| | ||||||||||| || | ||| || || Sbjct 17610166 -GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 17610108 Query 41486 GTTGTCGGTGCTAGT 41500 ||| ||||||||||| Sbjct 17610107 GTTTTCGGTGCTAGT 17610093 >seq2 Length=31686972 Score = 87.8 bits (96), Expect = 5e-13 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 40550 GTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATC 40609 || |||||| ||||| |||||||||||||||||| | ||| | | ||| | | ||| Sbjct 14358804 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14358863 Query 40610 AGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAAAAC 40668 |||||||||| ||| || ||| || || || ||||| || ||||| || || || | Sbjct 14358864 AGCCCAAGTATAAATAACGCGACC-TTGGCTATCAACTACAGA-TGGTTGAAATTGAACC 14358921 Query 40669 CATTGAGGTTAAAAGCCATAGT 40690 |||| || || ||||||||||| Sbjct 14358922 CATTTAGATTGAAAGCCATAGT 14358943 >seq8 Length=22678724 Score = 84.2 bits (92), Expect = 6e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 21568354 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 21568413 Query 40589 A 40589 | Sbjct 21568414 A 21568414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702379522408