Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq10 605 3e-168 seq2 93.3 5e-14 seq9 87.8 2e-12 >seq10 Length=19274048 Score = 605 bits (670), Expect = 3e-168 Identities = 717/969 (74%), Gaps = 17/969 (2%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 || ||| ||||| |||||||||||||| || | ||| || ||||| ||||||||||| | Sbjct 17611051 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAG 17610992 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| ||||||| | Sbjct 17610991 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 17610932 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||| || || || ||||| ||||| || |||| ||| | ||||| Sbjct 17610931 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 17610872 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||| || || || |||||||| ||| | | ||||||||| | ||||| |||||||| Sbjct 17610871 GAACCAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 17610812 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 || ||||| |||||||| || ||||| || || ||||| || || Sbjct 17610811 AAAACTAGCATATTGGAAGAT-------------TAACCATGAGCGGCCACAATATTATA 17610765 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||||||| |||||||| || ||||||| | || || || ||||||||||||| Sbjct 17610764 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 17610705 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| | |||||||||| |||||||| || || || || || Sbjct 17610704 CCTGATCAAACTAGAGGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCGAA 17610645 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| || || | ||| || || || ||||| |||||||| |||||||| ||||| Sbjct 17610644 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAA 17610585 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | ||| |||||||||||||||| || || | |||||| | ||| |||| || Sbjct 17610584 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCC 17610525 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||| | ||| || | || ||| || || | || ||||||||||| || || ||||| Sbjct 17610524 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 17610465 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| ||||||||||||||||| ||||| | |||||||| ||||| ||||| || Sbjct 17610464 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 17610405 Query 68499 TGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAA 68558 | | ||||| | |||||| | | | || | ||||||| |||||||| || Sbjct 17610404 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 17610345 Query 68559 CCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGA 68618 ||||||||||| | ||| ||||||||||| || |||||||| | || | ||| || Sbjct 17610344 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGA 17610285 Query 68619 ACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGG 68678 | ||||||||| | |||||| || || ||||| || || || | ||||||| |||||| Sbjct 17610284 AGTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 17610225 Query 68679 TTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 |||||||||||||| || || || || || |||||||||||||||| || || ||||| Sbjct 17610224 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 17610165 Query 68738 TGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGG 68796 ||||| | ||| || ||||||||||||| || || ||||| |||| |||||| ||| Sbjct 17610164 -AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 17610107 Query 68797 TTCTCTGTG 68805 || || ||| Sbjct 17610106 TTTTCGGTG 17610098 >seq2 Length=31686972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 67860 GTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGAGAACGTC 67919 || ||| || ||||| || ||||| ||||||||| | | | || ||||||| | || Sbjct 14358804 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14358863 Query 67920 TGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTGAAGTTGAAACC 67979 ||||| ||| | ||| ||| ||||||| | ||| |||||||| ||||| || Sbjct 14358864 AGCCCAAGTATAAATAACGCGACCTTGGCTATCAACTACAGA-TGGTTGAAATTGAACCC 14358922 Query 67980 ATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGAT 68027 ||| || ||||| ||||| || |||| ||| | ||||||||||| || Sbjct 14358923 ATTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 14358970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 67002 CCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAAC 67061 |||||||| || | |||| || | || | | || || || |||||||||||||| Sbjct 31659824 CCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCAGCAACTCCCATCATATGAAAT 31659765 Query 67062 GGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTG 67119 |||||||| ||||| ||||| |||||||| | |||||| | ||||||||| || |||| Sbjct 31659764 GGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTG 31659707 >seq9 Length=19219615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 3549546 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 3549489 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 3549488 TCTACCACTGAGCTACTGAGGA 3549467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572054314191840