Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 138 3e-27 seq5 138 3e-27 seq6 111 5e-19 seq3 95.1 4e-14 seq4 93.3 1e-13 seq1 93.3 1e-13 >seq8 Length=22678724 Score = 138 bits (152), Expect = 3e-27 Identities = 238/342 (70%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2602684 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2602743 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 2602744 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2602803 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2602804 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2602863 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || || || || || ||||| |||| || | | || | | Sbjct 2602864 CCCACGACTTTCAGGACCATAATCATCTTTTGTGAAGTGGGGCAACGTTC-GATCGATGA 2602922 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| || Sbjct 2602923 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGA 2602981 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | ||| || || ||||| ||| | |||||| Sbjct 2602982 GAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 2603023 >seq5 Length=24206129 Score = 138 bits (152), Expect = 3e-27 Identities = 214/306 (70%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2586502 ATTTCTAACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2586561 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| || || || ||||| |||||||| ||||| | | |||||| Sbjct 2586562 CTGGATATATCCAGTTTCCGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2586621 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2586622 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAA 2586681 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || || ||| || || |||||||||| || | || | Sbjct 2586682 CCCACGACTTTCAGGACCATAGTCATTTTTCGTGAAGTGTGGCAATGTTCGATTGGTGAA 2586741 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||||| || Sbjct 2586742 GCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATCTGTGA 2586801 Query 302838 AATATT 302843 |||||| Sbjct 2586802 AATATT 2586807 >seq6 Length=25711811 Score = 111 bits (122), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 156038 CATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATT 156094 ||||| || ||||| || |||||||| ||| ||||| ||||| || ||||| | ||| Sbjct 3088176 CATAG--AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT 3088233 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 ||| |||| ||||||||||| ||| |||||||| || ||||| ||||| || |||| Sbjct 3088234 GAAAACACGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCT 3088293 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 |||| | |||| ||| |||| || ||||| || || | |||| || Sbjct 3088294 CCCAGTAGCTCGAATATTGTGAACTGATACACCAATTCCTCCAGCAGATTTGCTTATGAC 3088353 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| |||||||| | ||||| | || || ||||| ||||||| ||| Sbjct 3088354 AGCACATTCCTTCAAAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3088404 Score = 96.9 bits (106), Expect = 1e-14 Identities = 316/473 (67%), Gaps = 20/473 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| || ||||| || || || |||| ||||| ||||| ||| | | ||| || Sbjct 22733014 ATATCAGCCCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 22733069 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | || || ||||||||||||||| ||| | | Sbjct 22733070 ATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--A 22733127 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || ||| ||| | ||||||||||||||||| |||| || | | || Sbjct 22733128 AT-ACCTG--TCCCTC-TTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCA 22733183 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||| | | || | || | || | || ||||| || |||| || || Sbjct 22733184 AGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGAC 22733243 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | |||| || ||||| ||||| | |||| | || | || | ||| ||||| |||| Sbjct 22733244 AAACATCTCCACAAACTCAGATCCTGATA-TCGAGAAAAACGGCACACCAGCTTCCCCTG 22733302 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | ||| | || || | |||||||| |||||||| || || | | ||||| |||| Sbjct 22733303 CAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACCCT 22733362 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | | | || || |||| || || || || | || Sbjct 22733363 TAGGGATGCGAGCACCAACAGCGGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCACTT 22733422 Query 289304 CC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 || | ||| || | ||||| ||||| ||| || || |||||| |||| |||| Sbjct 22733423 CCATGAAG-TCTTGCTTTGCTTCATCGACA-CCAGCAACATCATCAAATGTAA 22733473 >seq3 Length=33311619 Score = 95.1 bits (104), Expect = 4e-14 Identities = 207/303 (68%), Gaps = 14/303 (5%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| |||||||| | || |||||||| ||||| |||||| |||| ||| | Sbjct 22936939 GCAATAAGCCCACACTTCTCGCATACATGGACTCTGTACGCATCACTCTGGTCAAATAAC 22936880 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCG---TGTGAAATCATACAATCACGCTCCATTTCA 251520 | |||| ||| | ||||| || || | ||||||||| || | |||||| || Sbjct 22936879 CTTTCCTTAAGGAA---AAATGCAGCGCCATGAGCAATCATACAGTCCCTCTCCATCTCT 22936823 Query 251521 CCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACC 251580 || || || |||||||||||||| | | ||||| ||||| || | || || | | Sbjct 22936822 CCAAACCGGAGACCACCATCGCGTGAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGC 22936763 Query 251581 ATAGGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637 | |||||| | | || ||| || ||| |||| ||||| ||||| || | |||| Sbjct 22936762 ACAGGACC-ACG--GCCTCTAGAGTGAATCTTGTCATCCACCATGTGCTTAAGTCTCTGG 22936706 Query 251638 TAGAATGCGGGACCGATGAAGATGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTATA 251696 || | | ||||| | ||| || | | || |||| || |||||| || |||| || Sbjct 22936705 TAATAAGTAGGACCAAGGAAAATCATGGCAGTTAATTTTCT-TCCAGTGTGACCGTTGTA 22936647 Query 251697 CAT 251699 ||| Sbjct 22936646 CAT 22936644 >seq4 Length=27574323 Score = 93.3 bits (102), Expect = 1e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATT 289086 ||| |||||||||| ||| ||||||||||| | | | || | | || | | || || Sbjct 16719763 ACCCACAGCATCAAGTTCATCAATGAAAATTATAGATGGGGCAGCTTCTTTGGCCTCCTT 16719822 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | ||||| || |||||||||| |||||| ||||| | | ||| ||||||||| | Sbjct 16719823 G--AATAAATCCCTTACACGGGCTGCTCCTCTTCCAACGAAAACTTCAACAAATTCACTA 16719880 Query 289147 GCGGATACTTGAATGAATGTTACATT--TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || || || || | | ||| || || ||||| |||||||| |||||||| | Sbjct 16719881 GCAGAAAC-AGAGAAAAAGGGA-ATTCCAGCCTCTCCTGCAACTGCCCTTGCCAGAAGAG 16719938 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || || ||||| || || || | | ||||| ||| | |||| ||| || || Sbjct 16719939 TTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCC 16719993 >seq1 Length=36915442 Score = 93.3 bits (102), Expect = 1e-13 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||||||||| |||||||| | | || || ||| || | || | |||||| Sbjct 30559666 GCATCAATTTCATCAATGAATACAATACTAGGTGAACACTGCCGAGCTTCTTGAAATAAG 30559725 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 | | || | ||||| ||||| ||||||| ||||||| | || || ||| | || | | Sbjct 30559726 TTCCGCACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAGTCTGAACCAGA-AAT 30559784 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || | ||| | ||| | || ||||| || | || || || ||||| ||||| Sbjct 30559785 AGACAAGAAGGGCACACCAGACTCTCCTGCAGTAGCTTTAGCAAGGAGAGTCTTTCCTGT 30559844 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATAT 289272 || || || || | | ||| | |||||||||| |||||| ||||| ||| |||| Sbjct 30559845 GCCTGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAG--TTCTTCATAT 30559902 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 |||| || | || | || | |||| |||| || ||| | ||| || |||||||| Sbjct 30559903 TTCTTGGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCTTCATCACAG 30559962 Query 289333 CCTGCTACATC 289343 || |||||||| Sbjct 30559963 CCAGCTACATC 30559973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817373708044