Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq10 518 4e-142 seq2 91.5 2e-13 >seq10 Length=19274048 Score = 518 bits (574), Expect = 4e-142 Identities = 702/976 (72%), Gaps = 17/976 (2%) Strand=Plus/Plus Query 157593 TAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTC 157652 ||||| ||| | ||||| || || | || ||||| || || ||||||| || || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 157653 TGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATC 157711 | ||| | ||||| ||||| || || |||||||| ||||||| || || || || || Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 157712 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 157771 || || || ||||| || || ||||||| | | || || ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 157772 GCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 157831 | |||| || |||| || | || | ||||| || || || |||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 157832 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTC 157891 || ||||||||||| | || || || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 157892 ATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGC 157951 ||||| | | || ||||| |||||||||||||| | |||| | |||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 157952 CCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTC 158011 || ||||| ||| |||||||| ||||| || || || || ||||||| ||| | | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 17610509 Query 158012 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 158071 || ||| | |||||||| ||||| |||| ||||||| | || || ||||||||||| Sbjct 17610510 TACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 17610569 Query 158072 AACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTC 158131 |||| ||| |||||||||| ||||| || |||||||||||||| || || || ||| | Sbjct 17610570 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 17610629 Query 158132 GGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACT 158191 ||||| ||||| |||||||| || || || ||| ||||||||| || | | || || Sbjct 17610630 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACC 17610689 Query 158192 TCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGG 158250 | || | | || | ||||| ||||||| || || || | ||||||| || || Sbjct 17610690 T-CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 17610748 Query 158251 TCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTT 158310 ||||||||||||||| ||||| || || || || ||||| || ||||| Sbjct 17610749 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTT 17610795 Query 158311 CCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGT 158370 |||||| ||| || |||||||| ||||| || ||||||||| | | ||| |||||||| Sbjct 17610796 CCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGT 17610855 Query 158371 TGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTT 158430 || || || |||||||| || | || | || ||||| ||||| || ||||| || Sbjct 17610856 AGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATT 17610915 Query 158431 CAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGT 158490 ||| |||||||| || | ||||| | || ||||| || | || || ||||| ||| | Sbjct 17610916 CAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATAT 17610975 Query 158491 ACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCC 158550 | ||||| ||| ||||||||||||||| ||||| || ||| | || ||||||||||| Sbjct 17610976 CATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCC 17611035 Query 158551 ACTCGACCTTGCTGCT 158566 || ||||| ||| || Sbjct 17611036 TCTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 159777 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCC 159836 ||||| || ||| ||||| | | ||| | ||||||||||| || |||||||| || || Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 159837 TTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGC 159896 || |||||||||||||||||||| || |||| | || || || | || || ||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 159897 GTTACTGTAGAGAAC 159911 | || || || ||| Sbjct 31659826 GCAACCGTGGAAAAC 31659840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548374317743840