Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq10 562 3e-155 seq2 93.3 5e-14 seq8 89.7 6e-13 >seq10 Length=19274048 Score = 562 bits (622), Expect = 3e-155 Identities = 701/961 (73%), Gaps = 15/961 (2%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || | || ||||| ||||| ||||||| || || | ||| | ||||| Sbjct 17610105 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 17610164 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || ||||||||||| || || || || || ||||| || ||||| Sbjct 17610165 TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAG 17610224 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || ||| |||||||| | | ||||| ||||| || ||||||||| | |||||||| || Sbjct 17610225 CCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTACT 17610284 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||| || |||| ||||||| || || || |||||||| || ||| | ||||| ||| Sbjct 17610285 TCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGG 17610344 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCT 151165 | ||||| || ||||||| | || |||| | |||||| | ||||| | | | Sbjct 17610345 TTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 17610404 Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224 || ||||||||||||||||||||| || ||| ||||||||||||| ||||| ||| || Sbjct 17610405 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 17610463 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284 |||||| || ||||| ||||| ||||| | ||| || ||| | | || ||| | ||||| Sbjct 17610464 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCA 17610523 Query 151285 AGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGT 151344 ||| ||||| ||||| ||||| | || || ||||| || ||||||| ||| |||| Sbjct 17610524 AGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 17610583 Query 151345 CTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 ||||| |||||||| ||||| || ||||| || || || ||| | ||||| |||||||| Sbjct 17610584 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 17610643 Query 151405 CTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 151464 ||||| || || || ||| || ||||| |||| |||| || ||| || | | Sbjct 17610644 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAG 17610703 Query 151465 TGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 151524 || ||||| |||||||| || || | ||||||| || |||||||| |||||||| Sbjct 17610704 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 17610763 Query 151525 CTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTT 151584 || || || || ||||| || ||||| ||||||||||| ||| || Sbjct 17610764 TTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTTT 17610810 Query 151585 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 151644 ||||| || ||||| | ||||||||| | | || |||||||| || || || ||||| Sbjct 17610811 TAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTT 17610870 Query 151645 CACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704 |||||| | ||| | || || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 17610871 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 17610930 Query 151705 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 151764 | | ||| | || || || | || || ||||| || | | |||||||| Sbjct 17610931 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 17610990 Query 151765 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGC 151824 ||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||| ||| | Sbjct 17610991 TCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTAC 17611050 Query 151825 T 151825 | Sbjct 17611051 T 17611051 >seq2 Length=31686972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 151637 ATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTC 151696 || ||||||||||| | ||| | || || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 151697 AACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAAC 151756 ||||| || | | ||| | || || || | | || ||||| || | | ||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 151757 CGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 151804 |||||| ||| | ||||||||| |||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 152842 GCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCG 152901 ||||| || || |||||| | |||||| | |||||||| || || ||||| ||||| || Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 152902 TTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGG 152960 |||||||||||||| ||||| || | || || | ||| |||| | || |||||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 31659824 >seq8 Length=22678724 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 151754 AACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTC 151813 |||| ||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 21568425 AACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 21568366 Query 151814 GACCTTGCTGCT 151825 ||||| |||||| Sbjct 21568365 GACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549622317556640