Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq6 82.4 6e-11 >seq5 Length=24206129 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || || |||||||||||||||||| | || ||| | Sbjct 7376667 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCTTGGAGGTTGAGTCGTC 7376608 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| |||||| ||||| || ||| | ||| |||||| Sbjct 7376607 GGACACAATTGACAACGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 7376548 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||| || | ||| || || ||||| ||||||| | | || | || | |||||| Sbjct 7376547 GCAGCGACTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGGTTACAA 7376488 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGG 110480 ||| || || || || || |||||| ||| Sbjct 7376487 CATCCAGAAGGAGTCCACCTTGCACCTGG 7376459 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||| || || ||||| ||| | || ||||| || |||||| | || ||| || Sbjct 19881064 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTC 19881123 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| || || || ||| | ||| ||| | Sbjct 19881124 A-GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 19881182 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | || ||||| ||||||||||||| | | || | || || |||| Sbjct 19881183 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACA 19881242 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| || || ||||| | ||| ||||| Sbjct 19881243 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 19881274 >seq6 Length=25711811 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || ||||| ||||||||| | || ||| | | Sbjct 23416769 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 23416828 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 23416829 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 23416888 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || | |||||||||||| Sbjct 23416889 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 23416948 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| ||||| Sbjct 23416949 ATCCAGAAGGAGTCAACACTCCACCTGGTG 23416978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841539621916