Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq4 109 4e-19 seq6 100 2e-16 >seq5 Length=24206129 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||| ||| || | ||||| || || || ||||| ||| | || | |||||| Sbjct 7376451 ACGGAGCGCCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCTAAGGTGCGGCC 7376510 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | |||| || ||||||||||| ||||| ||||| || Sbjct 7376511 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTT 7376570 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| || | || | ||||| || || || || | || | Sbjct 7376571 GTCCTG-AATCTTTGCTTTCACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAA 7376629 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || || || || ||||| || |||||| Sbjct 7376630 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7376667 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | || || || | || || ||||| ||||| |||||||| ||||| || Sbjct 7377125 TCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGC 7377184 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| || || ||||| ||||| ||| | || | | ||||| | || || Sbjct 7377185 GAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTTAGGTGG 7377244 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || ||| || | |||||| | || | ||||||| || | Sbjct 7377245 AATACCCTCCTTGTCCTG-AATCTTGGCCTTGACATTGTCAATCGTGTCAG--AGGAC-- 7377299 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||| || |||||||| | || || ||||| |||||||| Sbjct 7377300 --TCAA-CCTTATGGTATTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7377345 >seq4 Length=27574323 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||||| || || || ||||| ||||| |||| ||||||| | Sbjct 24792862 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCA 24792803 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 24792802 TCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTG 24792743 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || | || || Sbjct 24792742 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATC 24792683 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 24792682 GTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 24792648 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || |||||||||||||| | || || ||| || || || |||||| Sbjct 24792388 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 24792329 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 || | || | | |||||| || || || || ||||| ||||| || ||| || | || Sbjct 24792328 GCGAAGATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG-AATCTTAGCCTT 24792270 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || || || || || | || || || |||||||| | ||| Sbjct 24792269 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 24792210 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| ||||||||||| Sbjct 24792209 CTTAACGAATATCTGCAT 24792192 >seq6 Length=25711811 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 21709540 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 21709481 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || ||||| || || || | |||| |||||||| || || || Sbjct 21709480 TAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGG 21709421 Query 29679 AATACCCTCTTTGTCTTG 29696 ||||||||||||||| || Sbjct 21709420 AATACCCTCTTTGTCCTG 21709403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219143661692