Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq10 522 3e-143 seq2 98.7 1e-15 >seq10 Length=19274048 Score = 522 bits (578), Expect = 3e-143 Identities = 703/976 (72%), Gaps = 17/976 (2%) Strand=Plus/Plus Query 157064 TAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACAT 157123 ||||| |||| | |||||| | || |||| ||||| ||||| | ||||| || || | Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 157124 TGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATC 157182 | | | |||||| |||| || ||| | || ||| | || || ||||| || ||||| Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 157183 GACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGT 157242 || |||||||| || || ||| |||||||| | | || || ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 157243 GCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCA 157302 | |||||||| |||| || |||| | ||||| ||||| || |||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 157303 TCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTG 157362 || ||||||||||| | ||||| || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 157363 ATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGC 157422 | || | | |||||||| |||||||||||||| || |||| | |||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 157423 CCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTC 157482 || ||||| |||||| || || || || || || ||||| | ||| || ||| | | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 17610509 Query 157483 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 157542 || ||| | |||||||| ||||| |||| ||||||| | || || ||||||||||| Sbjct 17610510 TACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 17610569 Query 157543 AACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTC 157602 |||| |||| | || |||||||||||||| || || ||||||||||| || |||||| | Sbjct 17610570 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 17610629 Query 157603 GGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACT 157662 || || ||||| |||||||| || || | ||| ||||||||| || | | || || Sbjct 17610630 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACC 17610689 Query 157663 TCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGG 157721 | || | ||| || | ||||| ||||||| || || || | ||||||| || || Sbjct 17610690 T-CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 17610748 Query 157722 TCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTT 157781 |||||| |||||||| || || || || || || || ||||| ||||| Sbjct 17610749 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTT 17610795 Query 157782 CCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGT 157841 |||||| ||| || |||||| | | | ||||||||| | | || |||||||| Sbjct 17610796 CCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGT 17610855 Query 157842 TGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTT 157901 || || || ||||||||||| | || | || || ||||| ||||| || ||||| || Sbjct 17610856 AGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATT 17610915 Query 157902 CAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGT 157961 ||| |||||||| || | ||||| | || ||||| || | || || ||||| ||| | Sbjct 17610916 CAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATAT 17610975 Query 157962 CCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCC 158021 | | ||||| ||| ||||||||||||||| ||||| || ||| | || ||||||||||| Sbjct 17610976 CATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCC 17611035 Query 158022 ACTGGATCTTGCTGCT 158037 || || || ||| || Sbjct 17611036 TCTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 159258 GCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCC 159317 || || ||||| | ||| | |||||| | ||||| || || |||||||| | ||||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 159318 TTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGG 159377 || |||||||||||||||||||| | |||| | || || |||| |||||||||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 159378 GTCACAGTTGAAAA 159391 | || || ||||| Sbjct 31659826 GCAACCGTGGAAAA 31659839 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 157849 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 157908 || ||||||||||| | || | || || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 157909 AACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAAC 157968 ||||| || | ||||| | || ||||| || | | || ||||| ||| || | ||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 157969 CGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 158016 || || ||||| ||||||||| ||||| || ||||| || ||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545273518208960