Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq10 468 6e-127 seq2 93.3 5e-14 seq3 87.8 2e-12 >seq10 Length=19274048 Score = 468 bits (518), Expect = 6e-127 Identities = 690/973 (71%), Gaps = 18/973 (2%) Strand=Plus/Plus Query 177571 TAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTC 177630 ||||| ||| | ||||| || || | || ||||| || || ||||||| || || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 177631 TGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATC 177689 | ||| | |||||| |||| || || |||||||| ||||||| || || || || || Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 177690 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 177749 || || || ||||| || || ||||||| | | || || ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 177750 GCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 177809 | |||| || |||| || | || | ||||| || || || |||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 177810 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 177869 || ||||||||||| | || || || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 177870 ATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGC 177929 | || | | |||||||| |||||||||||||| | |||||| |||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 177930 CCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-T 177988 || ||||| ||||||||| || || ||||||||||| || | || || ||||| | | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGAT 17610508 Query 177989 CTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTT 178048 || ||| | |||||||| |||| |||| ||||||| | || || ||||||||||| Sbjct 17610509 TTACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTT 17610568 Query 178049 TAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCT 178108 |||| ||| |||||||||| ||||| || || ||||||||||| || || |||||| | Sbjct 17610569 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 17610628 Query 178109 CGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTAC 178168 ||||| ||||| |||||||| || || || ||| |||||||||||| | | || || Sbjct 17610629 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAAC 17610688 Query 178169 TTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGG 178228 ||| | || | || || || |||| || || || | ||||||| || || Sbjct 17610689 CTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 17610748 Query 178229 ACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTT 178288 ||||| ||||| || ||||| || || || || |||||||| ||||| Sbjct 17610749 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTT 17610795 Query 178289 CCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGT 178348 ||||||||| || |||||||| ||||| | ||||||||| | | || |||||||| Sbjct 17610796 CCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGT 17610855 Query 178349 AGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATT 178408 ||| || || |||||||| || | ||| | || ||||| || || || || ||||| Sbjct 17610856 AGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATT 17610915 Query 178409 CAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGT 178468 ||| |||||||| || | | || | ||||| || || | || || ||||| || | Sbjct 17610916 CAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATAT 17610975 Query 178469 GCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCC 178528 |||||||||| ||| || |||||||| ||||||||| | || || || ||||||| Sbjct 17610976 CATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTAT-GCTCACAACTTCC 17611034 Query 178529 CGCTTGATCTTGC 178541 | || || || || Sbjct 17611035 CTCTAGACCTAGC 17611047 >seq2 Length=31686972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 179422 GCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCC 179481 || ||||| ||| ||||| | || ||||| ||||| || || || ||||| | ||||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 179482 TTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGA 179541 ||||| |||||||||||||| || | | || | |||||||| | ||||||||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 179542 GTAACTGTAGAGAA 179555 | ||| || || || Sbjct 31659826 GCAACCGTGGAAAA 31659839 >seq3 Length=33311619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||| || || || || | || ||||||||||| || |||||||| Sbjct 32147668 TACATCCTTGATGCCGCCGAGACCGCTGGAGTGGAGCTTCCCTACTCATGCCGTGCTGGA 32147727 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| ||||||||||| ||||| | | | || | || || ||||| || || Sbjct 32147728 GCATGCTCTACCTGTGCCGGTAAGATCGAGGCTGGCTCCGTCGACCAGTCGGATGGATCA 32147787 Query 138658 TTCCTTGATGATG 138670 ||||||||||||| Sbjct 32147788 TTCCTTGATGATG 32147800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605667109149920