Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 7e-13 >seq3 Length=33311619 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 201625 ||||||||| | ||||| ||||| ||| || | || |||| | | ||||||||| || Sbjct 22936161 CGTATACCACAGATTGGGGATAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTGGG 22936219 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCG--GGTATGACCCCGGATATT 201683 |||| |||| ||||||| || ||||||| || || | || || || || |||||| Sbjct 22936220 AATGACTTATACACAAGAGGACATGCCGTGGACT--ATTGAAGGCATCACACCTGATATT 22936277 Query 201684 ATAATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTGCAACTGTT 201743 || | |||||| || ||| ||||| | ||||| || |||| | |||| | || Sbjct 22936278 ATTGTGAATCCACATGCTATTCCATCCCGTATGACTATTGGTCAACTGATTGAGTGTATT 22936337 Query 201744 ATGGGTAAA 201752 ||||||||| Sbjct 22936338 ATGGGTAAA 22936346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655279901708000