Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 237 1e-56 seq11 120 2e-21 seq12 105 5e-17 seq2 98.7 7e-15 >seq3 Length=33311619 Score = 237 bits (262), Expect = 1e-56 Identities = 704/1076 (65%), Gaps = 20/1076 (2%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 |||| || || |||||| |||||| || ||||| ||||| || | ||||| ||| Sbjct 31524403 GTTGTCTTGTCTTCGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACA 31524344 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || |||||||| || || | ||||| ||||| || || | |||| | || || Sbjct 31524343 GTGATCTGAGGGACTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGG 31524284 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||| || || | || | | | |||||||| | | || || || ||| Sbjct 31524283 AGATTGTTGTCCCTGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGC 31524224 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 281649 || ||||| || || || | || || ||| || || |||||| || ||||| || Sbjct 31524223 TGGTTATCGGAGTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCT 31524165 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 || | ||||| | ||| || ||||| || | ||||||||| || ||||| || Sbjct 31524164 TGGGATGAGCACTGTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCAC 31524105 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 ||||| || | || || || | || || | | ||| ||| ||||| || || Sbjct 31524104 ATCAAGGAGAAGAAGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTG 31524045 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTA 281827 | |||||||| ||||| |||||||||||||| |||| | || || |||| || Sbjct 31524044 GACGGCAGCACCGTATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTC 31523987 Query 281828 CCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 281887 |||||||| |||| ||||| || ||| |||| || | || ||| || ||||| Sbjct 31523986 CCATTGAAGAAATCCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCAACA 31523927 Query 281888 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 281946 | |||| ||||| || ||| | || |||| |||| |||| | || || || Sbjct 31523926 AGGACAACATCATGGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCAC 31523868 Query 281947 GGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 282006 || || | || || || | ||| ||| || || || | ||||| || | Sbjct 31523867 AGGCTCCATACATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGAT 31523808 Query 282007 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 282066 ||| || |||||| || || || | ||||||| |||||| |||||||| | | Sbjct 31523807 GGTGGAATAGAAATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGT 31523748 Query 282067 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC 282126 || || || | | || || | |||||||| ||| || || || | || || | | Sbjct 31523747 GGAGGAGAGGGTCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG- 31523689 Query 282127 TGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 282184 | || | | ||| | |||| ||||||||||| |||| ||| | | || Sbjct 31523688 -GGTTCCCGCTGATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACC 31523630 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 || || || ||||| || || || || | | ||| | || | || ||| | || | Sbjct 31523629 AGGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCA 31523570 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 |||| || || |||| | | || | |||||| || |||||||| | |||||| Sbjct 31523569 AAAATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAA 31523510 Query 282305 ATAAGTACATTCATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 282357 || || || ||| | || | ||| || || ||||||||||| |||| || Sbjct 31523509 ATGAGCACGTTCTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGC 31523451 Query 282358 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 282417 |||||| ||||| ||||| || || | || |||||||||||| ||||| |||||||| Sbjct 31523450 AGCAGCTGTTGGCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCTGCATC 31523391 Query 282418 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||||| || || || || ||||| || || |||||||||||||| | ||| |||| Sbjct 31523390 TTTAGTTGCCTGCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 31523335 >seq11 Length=23014695 Score = 120 bits (132), Expect = 2e-21 Identities = 224/328 (68%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 22829424 TTCCTCTTGAATTCTTGTACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 22829365 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | || || | || | || | || || |||| | | || Sbjct 22829364 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 22829305 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 282328 | ||||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 22829304 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 22829245 Query 282329 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || || ||||||||||| |||| ||| ||||||||||| || || || || | | Sbjct 22829244 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCAGCAGTTGGCTCGTTGATGATGCGC 22829185 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 22829184 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 22829125 Query 282446 AAATATGCAGGAACAGTAATAACGGCAT 282473 || || ||||||||||| | ||| |||| Sbjct 22829124 AAGTAGGCAGGAACAGTGACAACAGCAT 22829097 >seq12 Length=20550741 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 6137834 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 6137781 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | |||||||| |||||||| ||||| | | ||| | Sbjct 6137780 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGTTCATTTATAATGCGGAGAACTTCC 6137721 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 6137720 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 6137661 Query 282455 GGAACAGTAA 282464 |||||||||| Sbjct 6137660 GGAACAGTAA 6137651 >seq2 Length=31686972 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 28811683 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 28811742 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 28811743 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 28811802 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || ||||| | || || ||| |||| |||| Sbjct 28811803 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 28811836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629810850712