Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=24206129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 137273 || || || || || ||||||||| | ||| | |||| || ||||| || || || Sbjct 7376470 GTGGACTCCTTCTGGATGTTGTAACCTGCTAAG-GTGCGGCCATCCTCGAGCTGCTTGCC 7376528 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| ||||||| || |||||||| || || ||||| || ||||| ||| ||| ||| Sbjct 7376529 AGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCTTT 7376588 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| | | || || || | || | || |||||||||||||| Sbjct 7376589 CACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAATGGTTTTGCCGGTCAATGT 7376648 Query 137394 TTTTACGAATATTTGCAT 137411 || || || |||||||| Sbjct 7376649 CTTGACAAAGATTTGCAT 7376666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543926718400