Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 136 8e-27 seq5 131 3e-25 seq6 125 1e-23 seq2 96.9 7e-15 >seq4 Length=27574323 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||||| || || || ||||| || |||||||| | ||| | | || Sbjct 24792406 CGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCA 24792347 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | ||| || |||||||| || || ||||| Sbjct 24792346 TCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTG 24792287 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| ||||||||||| | || || ||||| || || Sbjct 24792286 TCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATG 24792227 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||||||||| Sbjct 24792226 GTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 24792192 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||||| || | |||||| || || || ||||| || || ||||| | Sbjct 24792876 TACCTCCACGAAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTG 24792817 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| || || || || || ||||| ||||| || | || || ||||| | Sbjct 24792816 CAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTG 24792757 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| || ||||| ||| | || | Sbjct 24792756 GAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAA 24792697 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||||||||| || | ||||| ||||| |||||||| Sbjct 24792696 CCTCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 24792648 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || ||||| || || || || || || | || | | || Sbjct 24792634 CGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCA 24792575 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || ||||| ||||| Sbjct 24792574 TCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTG 24792515 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || ||||| || | || || |||| || || Sbjct 24792514 TCCTGGATCTTGGCCTTCACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATG 24792455 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||| ||||| Sbjct 24792454 GTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 24792420 >seq5 Length=24206129 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || ||||| | ||| || || || || ||||| || || || |||| Sbjct 19880835 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 19880776 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | ||||| || || || || || ||||||||||| || | || || || || || Sbjct 19880775 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 19880716 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || |||||||| || || || ||||| |||||| || || || Sbjct 19880715 ATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACC 19880656 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 19880655 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 19880609 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||||| || || || ||||| || || ||| | | || | | || || || || || Sbjct 7376463 GTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCTAAGGTGCGGCCATCCTCGAGCTG 7376522 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| |||| || ||||| || || || || ||||| || |||||||| Sbjct 7376523 CTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTT 7376582 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||| || || ||||| || || | || || ||||| || || || ||||| || Sbjct 7376583 TGCTTTCACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAATGGTTTTGCCGGT 7376642 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| ||||| || |||||| Sbjct 7376643 CAATGTCTTGACAAAGATTTGCATT 7376667 >seq6 Length=25711811 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || || || || ||||| || || ||||| | Sbjct 22964002 CCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCG 22964061 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || |||||||| || ||||||||||| || | ||| || || || || Sbjct 22964062 AGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGA 22964121 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || |||||||| || || ||||| ||||| |||||| | || || Sbjct 22964122 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAGGACTCAACC 22964181 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 22964182 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 22964228 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || ||||| | || | | || Sbjct 23416983 CGGAGCACCAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCA 23416924 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 23416923 TCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 23416864 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || || | || || || | || || Sbjct 23416863 TCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATG 23416804 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 23416803 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 23416769 >seq2 Length=31686972 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || ||||| || ||||| || || || |||| Sbjct 3056233 TACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAG 3056292 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || || || ||||| || | || || ||||| | Sbjct 3056293 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 3056352 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || ||||| || || || || || || || || || | || Sbjct 3056353 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCG-AGCTCTCA 3056411 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| || || ||||||||||| | ||||| ||||| |||||||| Sbjct 3056412 ACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 3056461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827049044068