Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq10 547 2e-151 seq2 107 6e-19 >seq10 Length=19274048 Score = 547 bits (606), Expect = 2e-151 Identities = 706/967 (73%), Gaps = 23/967 (2%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | || ||| Sbjct 17610099 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 17610157 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || | |||| || ||||| || ||||| || || || ||||| || |||||||| || Sbjct 17610158 CGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || || || || || ||| | ||||| |||||||| || || || || || | || Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||| | | || ||| ||||| | ||||| |||||||||||||||||| || || Sbjct 17610278 TCCTACTTCTGC--TGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTT 17610335 Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822 ||||| ||| | ||||| || || || | | || | || | |||||| | |||| Sbjct 17610336 GATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 17610395 Query 19823 ATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGG 19882 | | ||| ||||| || ||||||||||| || | || || || ||| | |||||| Sbjct 17610396 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGG 17610455 Query 19883 ATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCC 19941 ||| |||||| || || ||||| |||||||| || |||| || ||||| | | ||||| Sbjct 17610456 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTACCC 17610514 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTA 20001 ||||||| || || |||| |||| ||||||||| || || || ||||| ||||||| Sbjct 17610515 TATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTT 17610574 Query 20002 CATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGT 20061 ||| | |||||||| || || |||||||| || ||||| || || |||||| | ||||| Sbjct 17610575 TATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGT 17610634 Query 20062 GGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTC 20121 |||||||||||||| || || ||||||||||| ||||| |||| ||||| || || Sbjct 17610635 AGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTT-GCTTGGTAACCTCTA 17610693 Query 20122 GCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAG 20180 | ||| | | || || |||||| | ||| | || | ||||||| ||||| |||| Sbjct 17610694 GTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAG 17610753 Query 20181 AAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAAT 20240 | |||||||| ||||| || || |||||||||||||| |||||||||| Sbjct 17610754 AGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAAT 17610800 Query 20241 ACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 20300 | ||| ||| ||||| |||||| ||||||||||| | | ||| ||||| || |||| Sbjct 17610801 ATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAG 17610860 Query 20301 GGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACT 20360 ||||||||||| |||| || || || ||| ||||| || ||||| ||||| ||||| | Sbjct 17610861 GGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATT 17610920 Query 20361 TTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCA 20420 | ||||| || | | || | | | ||||| || ||| ||||||||||||| || ||| Sbjct 17610921 TCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCA 17610980 Query 20421 ATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTG 20480 | ||||||||||| || | || || ||||| ||||| ||||||| |||||||| || | Sbjct 17610981 ACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAG 17611040 Query 20481 ACCTTGC 20487 |||| || Sbjct 17611041 ACCTAGC 17611047 >seq2 Length=31686972 Score = 107 bits (118), Expect = 6e-19 Identities = 127/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 20296 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 20355 ||||| |||||||||| |||| || || || || ||||| || ||||| || || || Sbjct 14358977 GGTAGAGATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTT 14358918 Query 20356 CAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACAT 20415 ||| || ||||| || | | || | | | ||||| || ||| ||||||||||||| || Sbjct 14358917 CAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATAT 14358859 Query 20416 TCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCA 20466 |||| ||||| ||||| | | || || ||||| ||||| |||||||| Sbjct 14358858 CATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14358808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828778791896