Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq10 500 3e-137 seq2 102 2e-17 >seq10 Length=19274048 Score = 500 bits (554), Expect = 3e-137 Identities = 700/974 (72%), Gaps = 31/974 (3%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | || ||| Sbjct 17610099 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 17610157 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || | |||| || ||||| || ||||| || || || ||||| || |||||||| || Sbjct 17610158 CGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || || ||||| |||| | | || || |||||||| || || || || || | || Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | || ||| ||||| | ||||| |||||||||||||||||| || || Sbjct 17610278 TCCTACTTCTGC--TGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTT 17610335 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||| ||| | ||||| || || || | | || | || | |||||| | |||| Sbjct 17610336 GATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 17610395 Query 28951 GTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGG 29010 || | ||| ||||| || ||||||||||| || | || || || ||| | || ||| Sbjct 17610396 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGG 17610455 Query 29011 ATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCA 29070 ||| ||| ||||| |||||||| || ||||| || |||| |||||| | | ||||| Sbjct 17610456 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCT 17610515 Query 29071 TTCGGTCAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAA 29126 | |||||||| |||||| || | |||||||| || || || || || ||||| Sbjct 17610516 ATTGGTCAAGGAAGTTTCTTT----GATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 17610571 Query 29127 CTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGG 29186 || ||| | || ||||| || || |||||||| || ||||| || || |||||| | || Sbjct 17610572 CTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGG 17610631 Query 29187 CGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTT-GTCACGT 29245 || ||||| || ||||| || || ||||| ||||| ||||| |||| |||| || || | Sbjct 17610632 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTT-GCTTGGTAACCT 17610690 Query 29246 CCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGA 29304 || | ||| | | || || |||||| || ||| || | ||||||| ||||| Sbjct 17610691 -CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGT 17610749 Query 29305 CAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTC 29364 ||||| |||||||||||||| || || |||||||| ||||| |||||| Sbjct 17610750 CAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTC 17610796 Query 29365 CAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTG 29424 ||||||||| ||| || || |||||| ||||||||||| | | ||| ||||| || Sbjct 17610797 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTA 17610856 Query 29425 GTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTT 29484 ||||||||||||||| |||| || || || ||| ||||| || ||||| ||||| || Sbjct 17610857 GTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTC 17610916 Query 29485 AACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTT 29544 || || ||||| || | | || | | | ||||| || |||||||||||||||||| | Sbjct 17610917 AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC 17610976 Query 29545 CTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCA 29604 |||| || ||||| || || | ||||||||||| || ||| ||||||| |||||||| Sbjct 17610977 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCT 17611036 Query 29605 CTTGATCTGGCTAC 29618 || || || ||||| Sbjct 17611037 CTAGACCTAGCTAC 17611050 >seq2 Length=31686972 Score = 102 bits (112), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 29424 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 ||||| |||||||||| |||| || || || || ||||| || ||||| || || || Sbjct 14358977 GGTAGAGATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTT 14358918 Query 29484 TAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGT 29543 || || ||||| || | | || | | | ||||| || ||| |||||||||||||| | Sbjct 14358917 CAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATAT 14358859 Query 29544 TCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 |||| || || || || | | ||||||||||| || ||||||||||| Sbjct 14358858 CATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14358808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665579100152