Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq10 551 2e-152 seq2 98.7 3e-16 >seq10 Length=19274048 Score = 551 bits (610), Expect = 2e-152 Identities = 716/981 (73%), Gaps = 29/981 (3%) Strand=Plus/Plus Query 18737 TAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTC 18796 |||| || || || ||||||||||| || || |||||||| ||||||| || | | Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACC 17610149 Query 18797 TCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACAT 18854 | ||| | || ||| | ||| || ||||| |||||||| ||||| ||||| ||||| || Sbjct 17610150 TTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATAT 17610208 Query 18855 TGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGG 18914 |||||| || || ||||||||| | || | | ||||| |||||||| || || || || Sbjct 17610209 TGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGG 17610268 Query 18915 AGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 || | ||||| | | || ||| ||||| | ||||| |||||||||||||||||| Sbjct 17610269 TACCATTGTTCCTACTTCTGC--TGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCT 17610326 Query 18973 AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTC 19032 || ||||||| ||| | ||||| || || || | | || | || | |||||| Sbjct 17610327 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 17610386 Query 19033 CTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATG 19092 | |||| || | ||| ||||| || ||||||||||| || | || || || ||| Sbjct 17610387 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 17610446 Query 19093 CGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTT 19152 || ||||||||| |||||| || |||||||||||||| || || |||| || ||| | Sbjct 17610447 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 17610506 Query 19153 GTCTATCCATTTGGTCAAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGT 19209 | || || ||||||||| ||| |||| || | ||||||||| || || |||| Sbjct 17610507 ATTTACCCTATTGGTCAAGGAAGTTTCTTT---GATGGTATGCCTTTAGGAATATCTGGT 17610563 Query 19210 ACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCAC 19269 || ||||||| ||| ||||||||||||| || ||||||||||| ||||| || || ||| Sbjct 17610564 ACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCAC 17610623 Query 19270 ATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTT 19329 ||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| |||| |||| Sbjct 17610624 ATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTT-GCTT 17610682 Query 19330 GTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAA 19388 | || || | ||| | | ||||| |||||| | | |||| || | || |||| Sbjct 17610683 GGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAG 17610742 Query 19389 GTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCT 19448 ||||| ||||| |||||||||||||| ||||| || |||||||| || Sbjct 17610743 ATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA------------ 17610790 Query 19449 TATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTG 19508 || ||||| || || || ||||| |||||| |||| ||||| |||| |||||| Sbjct 17610791 -ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTG 17610849 Query 19509 GCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAA 19568 |||||| || || |||||||| | || | || | || || ||||| ||||| | || Sbjct 17610850 GCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAA 17610909 Query 19569 TGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGC 19628 || || || || ||||| || | |||| | | | ||||| || ||| |||||||||| Sbjct 17610910 CGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGC 17610969 Query 19629 TGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAA 19688 ||| || |||| |||||||| || || | || ||||||||||||||| ||||||| || Sbjct 17610970 TGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAA 17611029 Query 19689 CTTCCCACTTGATTTGGCTAC 19709 |||||| || || | ||||| Sbjct 17611030 CTTCCCTCTAGACCTAGCTAC 17611050 >seq2 Length=31686972 Score = 98.7 bits (108), Expect = 3e-16 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 19522 ATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTT 19581 |||||||| | || | || | || || ||||| ||||| | ||||| || || || Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 19582 AACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 19641 ||||| || | |||| | | | ||||| || ||| ||||||||||||| || |||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 19642 CGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 ||||| || || | | || ||||||||||||||||||||||| Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14358808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148779886296