Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08]
12 sequences; 308,272,304 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq10 535 5e-147
seq2 86.0 7e-12
>seq10
Length=19274048
Score = 535 bits (592), Expect = 5e-147
Identities = 701/968 (72%), Gaps = 17/968 (2%)
Strand=Plus/Plus
Query 157697 ACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCT 157756
||| | |||||| | || |||| ||||| ||||| ||||||| ||||| || | |
Sbjct 17610099 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 17610158
Query 157757 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCAT 157815
|||||| ||||| || || |||||||| ||||||| || || || || ||||| || ||
Sbjct 17610159 GCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217
Query 157816 CCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 157875
|| || || ||| ||||||| | | || || ||||| || ||||||||| | ||||
Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277
Query 157876 TCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGA 157935
||||| ||| || |||| | ||||| ||||| || |||||||| |||||| ||||
Sbjct 17610278 TCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 17610337
Query 157936 CGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCAT 157995
|||||| | || || || ||||||| | || | || | |||||| | | || |
Sbjct 17610338 TGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 17610397
Query 157996 CTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGAT 158055
| |||||||| |||||||||||||| || |||| | |||||||| || |||||
Sbjct 17610398 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 17610457
Query 158056 CTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTT 158115
||| |||||||| ||||| || || || || | ||| || ||| | | || ||| |
Sbjct 17610458 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 17610517
Query 158116 CGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACAT 158175
|||||||| ||||| |||| ||||||| | || || ||||||||||| |||| ||
Sbjct 17610518 TGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 17610577
Query 158176 GCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGC 158235
| |||||||||| ||||| || |||||||||||||| || || || ||| | ||||| ||
Sbjct 17610578 GATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 17610637
Query 158236 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACT 158295
||| |||||||| || || || ||| |||||||||||| | | || || | || |
Sbjct 17610638 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCT-CTAGTT 17610696
Query 158296 CGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAG 158354
| || | ||||| ||||||| || || || | ||||| | || |||||||| |
Sbjct 17610697 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 17610756
Query 158355 AAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACG 158414
||||||| || || || || || || ||||| || ||||||||||| |
Sbjct 17610757 AAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTCCAATATG 17610803
Query 158415 CTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCA 158474
|| || |||||||| ||||| || ||||||||| | | ||| |||||||| || || |
Sbjct 17610804 CTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGA 17610863
Query 158475 TCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCA 158534
| |||||||| || | || | || ||||| ||||| || ||||| ||||| ||||
Sbjct 17610864 TTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCA 17610923
Query 158535 ACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACC 158594
|||| || | ||||| | || ||||| || | || || ||||| ||| | | ||||
Sbjct 17610924 ACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACC 17610983
Query 158595 GCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATC 158654
| ||| ||||||||||||||| ||||| || ||| | || ||||||||||| || || |
Sbjct 17610984 GTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACC 17611043
Query 158655 TTGCTGCT 158662
| ||| ||
Sbjct 17611044 TAGCTACT 17611051
>seq2
Length=31686972
Score = 86.0 bits (94), Expect = 7e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 159860 TAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACC 159919
||||||| || ||| ||||| | | ||| | || || || || || ||||| | ||||
Sbjct 31659704 TAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACC 31659763
Query 159920 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATG 159979
| || |||||||||||||||||||| || |||| | || ||| | || || || ||||
Sbjct 31659764 CATTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATG 31659823
Query 159980 GTGCTACTGTAGAGAAC 159996
| || || || || |||
Sbjct 31659824 GGGCAACCGTGGAAAAC 31659840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 573023914046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |