Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq10 535 5e-147 seq2 86.0 7e-12 >seq10 Length=19274048 Score = 535 bits (592), Expect = 5e-147 Identities = 701/968 (72%), Gaps = 17/968 (2%) Strand=Plus/Plus Query 157697 ACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCT 157756 ||| | |||||| | || |||| ||||| ||||| ||||||| ||||| || | | Sbjct 17610099 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 17610158 Query 157757 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCAT 157815 |||||| ||||| || || |||||||| ||||||| || || || || ||||| || || Sbjct 17610159 GCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217 Query 157816 CCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 157875 || || || ||| ||||||| | | || || ||||| || ||||||||| | |||| Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277 Query 157876 TCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGA 157935 ||||| ||| || |||| | ||||| ||||| || |||||||| |||||| |||| Sbjct 17610278 TCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 17610337 Query 157936 CGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCAT 157995 |||||| | || || || ||||||| | || | || | |||||| | | || | Sbjct 17610338 TGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 17610397 Query 157996 CTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGAT 158055 | |||||||| |||||||||||||| || |||| | |||||||| || ||||| Sbjct 17610398 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 17610457 Query 158056 CTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTT 158115 ||| |||||||| ||||| || || || || | ||| || ||| | | || ||| | Sbjct 17610458 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 17610517 Query 158116 CGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACAT 158175 |||||||| ||||| |||| ||||||| | || || ||||||||||| |||| || Sbjct 17610518 TGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 17610577 Query 158176 GCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGC 158235 | |||||||||| ||||| || |||||||||||||| || || || ||| | ||||| || Sbjct 17610578 GATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 17610637 Query 158236 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACT 158295 ||| |||||||| || || || ||| |||||||||||| | | || || | || | Sbjct 17610638 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCT-CTAGTT 17610696 Query 158296 CGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAG 158354 | || | ||||| ||||||| || || || | ||||| | || |||||||| | Sbjct 17610697 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 17610756 Query 158355 AAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACG 158414 ||||||| || || || || || || ||||| || ||||||||||| | Sbjct 17610757 AAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTCCAATATG 17610803 Query 158415 CTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCA 158474 || || |||||||| ||||| || ||||||||| | | ||| |||||||| || || | Sbjct 17610804 CTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGA 17610863 Query 158475 TCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCA 158534 | |||||||| || | || | || ||||| ||||| || ||||| ||||| |||| Sbjct 17610864 TTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCA 17610923 Query 158535 ACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACC 158594 |||| || | ||||| | || ||||| || | || || ||||| ||| | | |||| Sbjct 17610924 ACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACC 17610983 Query 158595 GCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATC 158654 | ||| ||||||||||||||| ||||| || ||| | || ||||||||||| || || | Sbjct 17610984 GTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACC 17611043 Query 158655 TTGCTGCT 158662 | ||| || Sbjct 17611044 TAGCTACT 17611051 >seq2 Length=31686972 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 159860 TAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACC 159919 ||||||| || ||| ||||| | | ||| | || || || || || ||||| | |||| Sbjct 31659704 TAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACC 31659763 Query 159920 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATG 159979 | || |||||||||||||||||||| || |||| | || ||| | || || || |||| Sbjct 31659764 CATTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATG 31659823 Query 159980 GTGCTACTGTAGAGAAC 159996 | || || || || ||| Sbjct 31659824 GGGCAACCGTGGAAAAC 31659840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573023914046400