Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq10 508 7e-139 >seq10 Length=19274048 Score = 508 bits (562), Expect = 7e-139 Identities = 695/971 (72%), Gaps = 15/971 (2%) Strand=Plus/Plus Query 180994 TAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTC 181053 ||||| ||| | ||||| || || | || ||||| || || ||||||| || || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 181054 TGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATC 181112 | ||| | |||||| ||||| || || |||||||| ||||||| || || || || || Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 181113 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 181172 || || || ||||| || || ||||||| | | || || ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 181173 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 181232 | ||||||| |||| || | || | ||||| || || || |||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 181233 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 181292 || ||||||||||| | || || || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 181293 ATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGC 181352 | || | | || ||||| ||||| |||||||| || ||| | |||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 181353 CCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTC 181412 || ||||| ||||||||| || ||||| || ||||| || ||||||| ||| | | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 17610509 Query 181413 TATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTC 181472 || ||| | |||||||| ||||| ||| | ||||| | || || |||||||| ||| Sbjct 17610510 TACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 17610569 Query 181473 AACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTG 181532 |||| ||| |||| ||||| |||||||| ||||| || |||||||| || |||||||| Sbjct 17610570 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 17610629 Query 181533 GGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACA 181592 ||||| || |||||||| || ||||| || |||||||| ||||| |||| ||||| || Sbjct 17610630 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACC 17610689 Query 181593 TCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGA 181652 ||| | || | || || ||||||| || || || | ||||||| || || Sbjct 17610690 TCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGT 17610749 Query 181653 CAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTC 181712 ||||| |||||||| || || || || ||||| || ||||| |||||| Sbjct 17610750 CAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTC 17610796 Query 181713 CAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 181772 ||||||||| || |||||||| ||||| | ||||||||| | | || ||||||||| Sbjct 17610797 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTA 17610856 Query 181773 GTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTC 181832 || || || |||||||| || | || | || || ||||| || || || || |||||| Sbjct 17610857 GTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTC 17610916 Query 181833 AACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTG 181892 || |||||||| ||| | | || | ||||| || || | || || ||||| || | Sbjct 17610917 AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC 17610976 Query 181893 CTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCG 181952 |||||||||| ||| || |||||||| |||||||| || | || ||||||||||| Sbjct 17610977 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCT 17611036 Query 181953 CTTGATCTTGC 181963 || || || || Sbjct 17611037 CTAGACCTAGC 17611047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614617507807360