Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq10 489 2e-133 >seq10 Length=19274048 Score = 489 bits (542), Expect = 2e-133 Identities = 691/971 (71%), Gaps = 15/971 (2%) Strand=Plus/Plus Query 177862 TAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTC 177921 ||||| ||| | ||||| || || | || ||||| || || ||||||| || || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 177922 TGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATC 177980 | ||| | |||||| ||||| || || |||||||| ||||||| || || || || || Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 177981 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGT 178040 || || || ||||| || || ||||||| | | || || ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 178041 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 178100 | ||||||| |||| || | || | ||||| || || || |||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 178101 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTC 178160 || ||||||||||| | || || || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 178161 ATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGC 178220 ||||| | | || ||||| |||||||||||||| | |||| | |||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 178221 CCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTC 178280 || ||||| ||| ||||| || ||||| || ||||| || | || || ||| || | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 17610509 Query 178281 TATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTC 178340 || ||| | |||||||| || | ||| | ||||| | || || |||||||| ||| Sbjct 17610510 TACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 17610569 Query 178341 AACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTG 178400 |||| ||| |||| ||||| ||||| || ||||| || ||||| || || |||||||| Sbjct 17610570 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 17610629 Query 178401 GGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACA 178460 ||||| || ||||||||||| ||||| || |||||||| ||||| |||| ||||| || Sbjct 17610630 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACC 17610689 Query 178461 TCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGA 178520 ||| | | | ||||| ||||||| ||||| || | ||||| | || || Sbjct 17610690 TCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGT 17610749 Query 178521 CAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTC 178580 ||||| |||||||| || || || || || || ||||| || |||||| Sbjct 17610750 CAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTC 17610796 Query 178581 CAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 178640 ||||||||| || |||||||| ||||| | ||||||||| | | || ||||||||| Sbjct 17610797 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTA 17610856 Query 178641 GTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTC 178700 || || || |||||||| || | || | || || ||||| || || || || |||||| Sbjct 17610857 GTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTC 17610916 Query 178701 AACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTG 178760 || |||||||| || | | || | ||||| || || | || || ||||| || | Sbjct 17610917 AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC 17610976 Query 178761 CTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCG 178820 |||||||||| ||| || |||||||| |||||||| || | || ||||||||||| Sbjct 17610977 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCT 17611036 Query 178821 CTTGATCTTGC 178831 || || || || Sbjct 17611037 CTAGACCTAGC 17611047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606009509098560