Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq10 524 9e-144 seq2 95.1 1e-14 >seq10 Length=19274048 Score = 524 bits (580), Expect = 9e-144 Identities = 699/969 (72%), Gaps = 17/969 (2%) Strand=Plus/Plus Query 178881 CACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGC 178940 |||| | || ||| | || |||| ||||| ||||| ||||||| ||||| || | | Sbjct 17610098 CACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 17610157 Query 178941 TGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCA 178999 |||||| ||||| || || | || ||| | || || ||||| || |||||||| || | Sbjct 17610158 CGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTA 17610216 Query 179000 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 179059 | ||||| || || ||||||| | | || |||||||| || ||||||||| | ||| Sbjct 17610217 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTG 17610276 Query 179060 TCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCG 179119 | || | ||| || | || | ||||| ||||| || |||||||| ||||| | | Sbjct 17610277 TTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 17610336 Query 179120 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCA 179179 |||||||| | || || || ||||||| | || | || | |||||| | | || Sbjct 17610337 ATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 17610396 Query 179180 TCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGA 179239 | | |||||||| |||||||||||||| || |||||| ||||||||||| |||| Sbjct 17610397 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 17610456 Query 179240 TCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTT 179299 | ||||||||| || || || || || ||||| | ||| || ||| | | || ||| Sbjct 17610457 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTA 17610516 Query 179300 TCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACA 179359 | |||||||| ||||| ||||| ||||||| | || || ||||||||||| |||| | Sbjct 17610517 TTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 17610576 Query 179360 TGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG 179419 || |||||||||| ||||| || |||||||||||||| || || || ||| | ||||| | Sbjct 17610577 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 17610636 Query 179420 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGC 179479 |||| |||||||| || || || ||| ||||||||| || | | || || | || | Sbjct 17610637 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCT-CTAGT 17610695 Query 179480 TTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAA 179538 ||| || | ||||| ||||| | || || || | ||||| | || || ||||| Sbjct 17610696 TTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAG 17610755 Query 179539 GAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATAT 179598 |||||||| ||||| || || || || ||||| || |||||||||||| Sbjct 17610756 GAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTCCAATAT 17610802 Query 179599 GCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGC 179658 || ||||||||||| || ||||| ||||||||| | | ||| ||||| || || || Sbjct 17610803 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGG 17610862 Query 179659 ATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTC 179718 || |||||||||||| | || | || ||||| ||||| || ||||| ||||| ||| Sbjct 17610863 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTC 17610922 Query 179719 AACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAAC 179778 ||||| || | |||| | ||||| || || |||| || ||||| || | | ||| Sbjct 17610923 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 17610982 Query 179779 CGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 179838 ||||| | | ||||||||||| ||||| || ||| | || ||||||||||| || ||| Sbjct 17610983 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGAC 17611042 Query 179839 CTTGCTGCT 179847 || ||| || Sbjct 17611043 CTAGCTACT 17611051 >seq2 Length=31686972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 180502 TAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACC 180561 ||||||| || ||| ||||| | ||||| | || || || || || ||||| | |||| Sbjct 31659704 TAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACC 31659763 Query 180562 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATG 180621 | || |||||||||||||||||||| || |||| | || |||||| || || |||| Sbjct 31659764 CATTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATG 31659823 Query 180622 GCGTAACTGTGGAGAAC 180638 | | ||| ||||| ||| Sbjct 31659824 GGGCAACCGTGGAAAAC 31659840 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 179659 ATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTC 179718 || |||||||||||| | || | || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 179719 AACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAAC 179778 ||||| || | |||| | ||||| || || || | || ||||| || | | ||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 179779 CGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 179826 |||||| | | | ||||||||| ||||| || ||||| || ||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610329508450560