Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 113 6e-20 seq2 96.9 5e-15 >seq6 Length=25711811 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 3088201 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 3088260 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| ||||| || || | || |||||||| || || Sbjct 3088261 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 3088320 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| |||||||| || ||| || | |||||| ||||| || ||||| || Sbjct 3088321 TACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 3088380 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 3088381 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 3088422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 7420785 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 7420844 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 7420845 GCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 7420903 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 7420904 AGATCCCCTCGAC 7420916 >seq2 Length=31686972 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| |||| ||| || Sbjct 30270795 TCCGCCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCC 30270736 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||||||||| ||| ||||| || | || | |||||| ||| || Sbjct 30270735 ATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGA 30270676 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAACGTTTCAATGTGTCAT 69925 ||||| ||||| || || ||||| | ||| |||||| | | || |||| Sbjct 30270675 GAGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTATCAT 30270620 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| |||||||||||| ||||| | || || |||||| Sbjct 30270619 AAATTCCCTCAATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 30270573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680