Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 >seq6 Length=25711811 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 7420800 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 7420859 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 7420860 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 7420919 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 7420920 GGCGAAGGCGACGAGGCGCTCGGCGAAG 7420947 Score = 114 bits (126), Expect = 2e-20 Identities = 198/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | || ||| |||||||| | | || ||||| ||| Sbjct 22732978 TCAAAACGTCCAGGTCTGAGTAAAGCAGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 22733037 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || || || ||||| | Sbjct 22733038 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGATTCAAA 22733097 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| | ||| | |||| | || Sbjct 22733098 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTCCCA 22733151 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || || | | ||| Sbjct 22733152 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAG 22733211 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| || || ||||||||||||||||| Sbjct 22733212 AGATCACGAACCCGGGAGGCACCAACTCCGACAAACATCTCCACAAA 22733258 Score = 109 bits (120), Expect = 7e-19 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || ||||| || || || |||||||||||| | Sbjct 25371785 CAAATCCATCCATCTCAGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCC- 25371843 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | ||||||| || ||| | || || |||||||| |||||||||||||| || Sbjct 25371844 -CCTCCGAGCCCAGCACCACGCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGAT 25371902 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| |||||| ||||| Sbjct 25371903 GCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACC 25371962 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| ||| || || | | || | ||| || |||||| || | || || Sbjct 25371963 GACGAACAGCTCAACGAACTCGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCC 25372022 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 |||| ||| || || || || ||||| || || || ||| || |||| ||| || Sbjct 25372023 GGCGACGGCACGCGCCAGCAGTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCAGGCATCC 25372082 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 25372083 CTTGGGGATCTTGGCCCC 25372100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 272/408 (67%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 1225610 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1225551 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || |||| | || | |||||| | | | ||| || || Sbjct 1225550 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCAT-GAGCAGCCG 1225492 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||| | ||| ||| |||||| |||| ||| | || Sbjct 1225491 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1225432 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | |||| || || || || || ||||| | | Sbjct 1225431 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1225373 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAG----TCTT-GAAGAGCTCCACGGCAAA 122663 ||| | | | || | || | ||| || || | || ||| || ||| || Sbjct 1225372 GGAC-GCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 1225318 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || |||||||||||| || ||||| || || || || |||||| || || ||||| Sbjct 1225317 GTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 1225258 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAA 122771 ||| || |||||||| | ||| | || ||||||||||| || ||||| Sbjct 1225257 GAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAA 1225210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031905795200