Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 161 1e-34 >seq6 Length=25711811 Score = 161 bits (178), Expect = 1e-34 Identities = 313/452 (69%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 7420501 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 7420560 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || ||| | | | | |||||| || Sbjct 7420561 CAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGTGCCAT-GAGGAGGCG 7420619 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| | || ||||||| ||| ||| |||||| |||| ||| | || Sbjct 7420620 GTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 7420679 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| ||||| || || || ||||| || Sbjct 7420680 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 7420738 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAACT 130022 | | | | || | | | | ||| | | ||| | || ||| || ||| || | Sbjct 7420739 GGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAGT 7420795 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 7420796 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 7420855 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | ||||||||||| | |||||| || || || || ||||| ||||||||||||||||| | Sbjct 7420856 GCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGA 7420915 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || ||||| || | ||| ||||| || ||| Sbjct 7420916 CGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 7420947 Score = 141 bits (156), Expect = 1e-28 Identities = 285/411 (69%), Gaps = 20/411 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 1225610 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1225551 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || |||| || | | |||| || || Sbjct 1225550 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCAC-CCGAGCGCCATGAGCAGCCG 1225492 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| |||| |||||| |||| ||| | || Sbjct 1225491 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1225432 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| |||||||| || || ||||| | | Sbjct 1225431 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1225373 Query 129966 GAATGGTCTCCGTGCCAGGTCTA--TTGC---GCA--AAGTCTT-GAAGAGTTCCACGGC 130017 | | | |||| | ||| | |||| | | | ||| | || ||| || ||| Sbjct 1225372 GGACG-----CGTGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 1225321 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || ||||||||||||||| ||||||||||| || || |||||| || || || Sbjct 1225320 GAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 1225261 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 130128 |||||| || |||||||| | |||||| || || || ||||| || ||||| Sbjct 1225260 CATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAA 1225210 Score = 127 bits (140), Expect = 3e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 25371685 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 25371744 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| |||| || || | | | |||| ||||||||||||||| Sbjct 25371745 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 25371804 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCAGGCATACCACCCGCACTGCG 14229 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 25371805 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 25371863 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||||||||| ||||| ||||| || || || | ||| Sbjct 25371864 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 25371923 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 25371924 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 25371983 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || |||| || || ||| || || | || || |||| ||| || || || || Sbjct 25371984 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 25372043 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 25372044 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 25372100 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || ||||||||| | ||| || || || || |||| ||| || || | ||||| Sbjct 22733008 TCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAA 22733067 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||||||||||| | ||||| | || || || | ||||||||| || | Sbjct 22733068 CCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACCA 22733127 Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275 ||| | | | |||| | || || || ||||||||||| | || || || || || Sbjct 22733128 ATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGA 22733187 Query 14276 TGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAA 14333 ||| || || |||| |||| ||| || || | |||||| || || |||| Sbjct 22733188 GCATTCTCCTTTGC--CTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGACAA 22733245 Query 14334 ACATCTCCACAAA 14346 ||||||||||||| Sbjct 22733246 ACATCTCCACAAA 22733258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435107234720