Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 145 9e-30 >seq6 Length=25711811 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 7420947 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 7420888 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 7420887 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 7420828 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 7420827 GCTCATCTCCCGCGACGAGGGCCTGCAC 7420800 Score = 113 bits (124), Expect = 5e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902 ||||| ||||| |||||||| || | |||||||||||||| || |||||||| || ||| Sbjct 1225210 TTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTC 1225269 Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||||||||||| ||||| || |||||||| |||||| Sbjct 1225270 ACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCAC 1225311 Score = 113 bits (124), Expect = 5e-20 Identities = 274/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 25371697 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 25371756 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||| |||| | ||| | | |||| ||||||||||| ||||| || |||||| Sbjct 25371757 GCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 25371816 Query 9644 ATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 || || || |||| |||||||| | | | | | ||||||| || ||| | || || Sbjct 25371817 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 25371875 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAG 9760 ||||||||| |||||||||||||||||||| || | || || | || || || Sbjct 25371876 GGCATCAATTTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGAAC 25371933 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 || |||| || | ||| || ||||| || |||| ||| || || | | |||| Sbjct 25371934 AGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCG 25371993 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || || ||| || || | || || || | ||| || || || || ||||| || Sbjct 25371994 CAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCG 25372053 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 || || ||| || |||| | |||| | | | || |||||||| || Sbjct 25372054 GTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 25372100 Score = 102 bits (112), Expect = 1e-16 Identities = 231/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 22733007 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 22733066 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 22733067 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 22733120 Query 9676 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 ||||||| | ||| | |||| | || || |||||||| ||||||| || || || Sbjct 22733121 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 22733180 Query 9730 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||| || ||| || || |||| |||||||| || || || ||| || || Sbjct 22733181 GCAAGGAGCATTCTCCTTTGC--CTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACT 22733238 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 22733239 CCGACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTC 22733297 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| || ||| || | ||||||||| || || || Sbjct 22733298 CCCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 22733339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260712510880