Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 181 1e-40 >seq6 Length=25711811 Score = 181 bits (200), Expect = 1e-40 Identities = 566/863 (66%), Gaps = 29/863 (3%) Strand=Plus/Minus Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631 |||||||| | | |||| | || ||||| ||| | | || |||||| | | |||| Sbjct 7421350 GGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGG 7421291 Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGC 59688 || | |||||| ||| ||| | | |||||| ||| |||||||| | Sbjct 7421290 AGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCC 7421231 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | |||||| || || ||||||||||| || || || || ||| | || || Sbjct 7421230 ACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACC 7421171 Query 59749 TAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | | ||| || || ||| | |||||||| || | ||||||| | Sbjct 7421170 TCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCT 7421114 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || |||| ||||||||||||| ||||||||| || |||| | | Sbjct 7421113 TCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTAC 7421055 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | |||||||| ||||| || || ||| || || Sbjct 7421054 ATCCGCGACGGCGCCGAGAAGGACCGGCTGTTCCGCGCCATCGACACCGTCCCGGCCGTG 7420995 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGT 59984 | || || || |||||||||| ||||| ||| | || || | || Sbjct 7420994 CGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGTGGCGAGCGCTTCGCCGAGCGC 7420935 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 ||| | || || || ||||| || || ||||||||||| ||||| ||||| || || ||| Sbjct 7420934 CTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTC 7420875 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 |||||||| ||||| || |||||||||||||| | |||||||||||||| || ||||| Sbjct 7420874 TGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGC 7420815 Query 60105 GACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATG 60163 ||||||||||| || || || || || | ||||| | ||| | || | Sbjct 7420814 GACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAA--G 7420758 Query 60164 CCCTTCCA--AGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTT 60220 | | | | | | | | |||| || | | | | | || | ||||| ||||| Sbjct 7420757 CTCGACGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGT-CGACATCGAGAGGGAGTT 7420699 Query 60221 CATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTA 60280 | || || ||||| || | ||| | || ||| ||| | |||| ||||| Sbjct 7420698 CGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTA 7420639 Query 60281 CATTCAGTTTGTCGCGGACCG---CCTCATGG--CCCAGTTTGGAGAAGGACCAATTTAC 60335 ||| | || ||||| ||||| |||||||| | | | | ||||| || ||| Sbjct 7420638 CATCGAATTCGTCGCCGACCGCCTCCTCATGGCACTCGGCTGCAAGAAG-----ATGTAC 7420584 Query 60336 GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTC 60395 ||| ||||| ||||||||||||||| |||||| || | || |||||||||||| Sbjct 7420583 AACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTC 7420524 Query 60396 TTTGAGAAGCGGGTCGGGGATTA 60418 || |||||||| ||||| || || Sbjct 7420523 TTCGAGAAGCGCGTCGGCGACTA 7420501 Score = 122 bits (134), Expect = 1e-22 Identities = 279/408 (68%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 60018 TTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTG 60077 ||||| || || ||||| || || ||||||||||| ||||| || |||||||||||||| Sbjct 1225210 TTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTC 1225269 Query 60078 AGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC- 60136 | |||||||||||||| || ||||| |||||||| ||||| || || || || | Sbjct 1225270 ACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGC-CTGCCT 1225328 Query 60137 GCTCTATTCACACCT-ATTGGAAAAAT-GCCCTTCCAAGGATATTCACAAGATTGT-TCA 60193 ||||| | ||| || || | | | || | | || |||| || | Sbjct 1225329 CCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCACG--CGTCCAGGAGATCGTCGCC 1225386 Query 60194 GTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGG 60253 | | | || || | ||||| |||||| || || ||||| || | ||| | || Sbjct 1225387 GACGCCGTG-GACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGG 1225445 Query 60254 TATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGC 60310 ||| ||| | |||| |||||||| |||| ||||| ||||| |||||||| Sbjct 1225446 GATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGC 1225505 Query 60311 CCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCAT 60370 | | || | | || || ||| ||| ||||| ||||||||||||||| ||| Sbjct 1225506 GC--TCGGGTGCAAGA-AGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCAT 1225562 Query 60371 CTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| || | || |||||||||||||| |||||||| ||||| || || Sbjct 1225563 CTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1225610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524717721280