Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08]
12 sequences; 308,272,304 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 8e-24
seq1 93.3 5e-14
seq7 91.5 2e-13
seq12 89.7 6e-13
seq10 89.7 6e-13
seq3 89.7 6e-13
seq2 89.7 6e-13
seq5 82.4 8e-11
>seq6
Length=25711811
Score = 125 bits (138), Expect = 8e-24
Identities = 274/403 (68%), Gaps = 8/403 (2%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
||||| ||||| || || |||||||| | ||| |||||||| |||||||| || ||||
Sbjct 7420843 AGGCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 7420902
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--G 74922
||||| || ||||| || || |||||||| ||||| | ||||| | || ||| | |
Sbjct 7420903 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCACCG 7420959
Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981
|| ||||| | ||||| || || || || || || ||||| || ||||| ||
Sbjct 7420960 TCGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCCGGGACGGTGTCGATGGCG 7421019
Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041
|||| || | ||||||| || || || | | || | || || ||||||
Sbjct 7421020 CGGAACAGCCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 7421079
Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100
|||| || || || |||| || ||| |||| | ||||||| | || ||||| ||
Sbjct 7421080 ATCTCGGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGC 7421138
Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160
| ||| || || || | | ||| ||||| | ||||||||||| |||||
Sbjct 7421139 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 7421198
Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203
|||||| || || || || ||| ||||||||||| |||
Sbjct 7421199 GGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 7421241
>seq1
Length=36915442
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 1477515 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1477456
Query 79684 TGAGCTACGAAAGCAA 79699
||||||||||||||||
Sbjct 1477455 TGAGCTACGAAAGCAA 1477440
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 27148906 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 27148847
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 27148846 TGAGCTACGAAAGC 27148833
>seq7
Length=24128185
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 1730266 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1730207
Query 79684 TGAGCTACGAAAGCAAA 79700
|||||||||||||| ||
Sbjct 1730206 TGAGCTACGAAAGCTAA 1730190
>seq12
Length=20550741
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2998066 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2998125
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 2998126 TGAGCTACGAAAGC 2998139
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 20161436 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20161495
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 20161496 TGAGCTACGAAAGC 20161509
>seq10
Length=19274048
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 262584 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 262525
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 262524 TGAGCTACGAAAGC 262511
>seq3
Length=33311619
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 6429233 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6429292
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 6429293 TGAGCTACGAAAGC 6429306
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 29457249 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 29457308
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 29457309 TGAGCTACGAAAGC 29457322
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || ||| ||||||||||||||||||||||||||| |||||
Sbjct 24284862 TGCTTTCGTTGAGAGTCGAATTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24284921
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 24284922 TGAGCTACGAAAGC 24284935
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || ||| ||||||||||||||||||||||||||| |||||
Sbjct 24286226 TGCTTTCGTTGAGAGTCGAATTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24286285
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 24286286 TGAGCTACGAAAGC 24286299
>seq2
Length=31686972
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 22461809 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22461868
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 22461869 TGAGCTACGAAAGC 22461882
>seq5
Length=24206129
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2860080 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2860139
Query 79684 TGAGCTACGAAAGCAAA 79700
|||||||||| ||| ||
Sbjct 2860140 TGAGCTACGAGAGCTAA 2860156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215917917600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |