Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 125 8e-24 seq1 93.3 5e-14 seq7 91.5 2e-13 seq12 89.7 6e-13 seq10 89.7 6e-13 seq3 89.7 6e-13 seq2 89.7 6e-13 seq5 82.4 8e-11 >seq6 Length=25711811 Score = 125 bits (138), Expect = 8e-24 Identities = 274/403 (68%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 7420843 AGGCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 7420902 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--G 74922 ||||| || ||||| || || |||||||| ||||| | ||||| | || ||| | | Sbjct 7420903 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCACCG 7420959 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 7420960 TCGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCCGGGACGGTGTCGATGGCG 7421019 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| || | ||||||| || || || | | || | || || |||||| Sbjct 7421020 CGGAACAGCCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 7421079 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | || ||||| || Sbjct 7421080 ATCTCGGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGC 7421138 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | ||||||||||| ||||| Sbjct 7421139 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 7421198 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 |||||| || || || || ||| ||||||||||| ||| Sbjct 7421199 GGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 7421241 >seq1 Length=36915442 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1477515 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1477456 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1477455 TGAGCTACGAAAGCAA 1477440 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 27148906 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 27148847 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 27148846 TGAGCTACGAAAGC 27148833 >seq7 Length=24128185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1730266 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1730207 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 1730206 TGAGCTACGAAAGCTAA 1730190 >seq12 Length=20550741 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2998066 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2998125 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2998126 TGAGCTACGAAAGC 2998139 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 20161436 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20161495 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 20161496 TGAGCTACGAAAGC 20161509 >seq10 Length=19274048 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 262584 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 262525 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 262524 TGAGCTACGAAAGC 262511 >seq3 Length=33311619 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 6429233 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6429292 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 6429293 TGAGCTACGAAAGC 6429306 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 29457249 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 29457308 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 29457309 TGAGCTACGAAAGC 29457322 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || ||| ||||||||||||||||||||||||||| ||||| Sbjct 24284862 TGCTTTCGTTGAGAGTCGAATTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24284921 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 24284922 TGAGCTACGAAAGC 24284935 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || ||| ||||||||||||||||||||||||||| ||||| Sbjct 24286226 TGCTTTCGTTGAGAGTCGAATTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24286285 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 24286286 TGAGCTACGAAAGC 24286299 >seq2 Length=31686972 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 22461809 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22461868 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 22461869 TGAGCTACGAAAGC 22461882 >seq5 Length=24206129 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2860080 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2860139 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 2860140 TGAGCTACGAGAGCTAA 2860156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215917917600