Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq10 477 1e-129 seq2 120 4e-22 seq8 102 1e-16 >seq10 Length=19274048 Score = 477 bits (528), Expect = 1e-129 Identities = 678/954 (71%), Gaps = 15/954 (2%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 17610112 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 17610170 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 17610171 TTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 17610230 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| || |||||||| || ||||| || | | || || | || Sbjct 17610231 TCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTACTTCTGCT 17610290 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | ||| Sbjct 17610291 GCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 17610350 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 17610351 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 17610410 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||| |||| | | || || |||||||||||||| ||||||||| Sbjct 17610411 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 17610470 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | || || | ||||||||| | Sbjct 17610471 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 17610530 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||| ||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 17610531 TTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 17610590 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 |||||||| ||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 17610591 GCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 17610650 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | | || || ||| | | || || || Sbjct 17610651 GGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAGGGAAACC 17610710 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||||||||| || | ||||||| ||| || ||||| |||||||| || || Sbjct 17610711 ACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAAT 17610770 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| || || || ||||| |||||||| |||||| ||| || ||| Sbjct 17610771 ATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTTTTAACAAC 17610817 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | | || | || || || | || ||||| ||||| Sbjct 17610818 TCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCT 17610877 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || ||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct 17610878 TTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTT 17610937 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | | ||| || ||| ||| |||| |||||| | |||||||| || |||||| Sbjct 17610938 GATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 17610997 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| |||||||| ||| |||||||||||||||| || ||||| ||| || Sbjct 17610998 ATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 120 bits (132), Expect = 4e-22 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||| ||||| | ||| || | || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| ||||| | || | | ||| || ||| ||| |||| |||||| | ||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 |||||||| |||| ||||||||| |||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 >seq8 Length=22678724 Score = 102 bits (112), Expect = 1e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 |||||| | |||| ||| || |||||||||||||| |||||||| ||||||||||||||| Sbjct 21568434 GATATCATCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAAC 21568375 Query 177079 TTCCCACTTGACCTTGCTGCT 177099 ||||| || ||||| |||||| Sbjct 21568374 TTCCCTCTAGACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494309475840