Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq10 457 1e-123 seq4 257 2e-63 seq9 205 1e-47 seq8 158 2e-33 seq2 134 2e-26 seq12 116 5e-21 seq3 96.9 4e-15 seq11 91.5 2e-13 >seq10 Length=19274048 Score = 457 bits (506), Expect = 1e-123 Identities = 666/944 (71%), Gaps = 13/944 (1%) Strand=Plus/Plus Query 189705 TTGGTTGGTTTGGTGTACTCATGATTCCATGCTTGCTCGCAGCAGCAGCATGCTTCGTTG 189764 |||| ||||||||||| | ||||| || ||| | | ||| | | || || Sbjct 17610118 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 17610177 Query 189765 TTGCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTT 189824 | || || || || || || || ||||| |||||||| || | ||||| ||| | |||| Sbjct 17610178 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 17610237 Query 189825 CACTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTG 189884 | | || || || ||||| || || |||||| | |||| ||| | || ||| | | Sbjct 17610238 CTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTACTTCTGCTGCGGTCG 17610297 Query 189885 GTCTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGGCTTTACAATGGTG 189944 | | ||||| |||||||| |||||||| ||| | || ||||||||| | |||||||| | Sbjct 17610298 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 17610357 Query 189945 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGAC 190004 ||||||| || | | | | |||||| | ||||| | | || ||||| | Sbjct 17610358 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 17610417 Query 190005 AGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 190064 |||||||| | | | | || |||||| | |||||||| |||||| |||||||| | Sbjct 17610418 AGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 17610477 Query 190065 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTG 190124 | || | || || ||| || ||| | | ||||| ||||||| || |||| || Sbjct 17610478 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTTTG 17610537 Query 190125 ATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAAC 190184 |||||||||||||||| || || ||||| |||||||| ||| |||||||||| ||||| | Sbjct 17610538 ATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 17610597 Query 190185 ATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCAT 190244 |||| ||||||||||| ||||| || ||| ||||||||| ||| | || || || | Sbjct 17610598 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCC 17610657 Query 190245 TATTCTCTGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAAACAACTGGTT 190304 ||||| ||| |||||||||| | ||||| ||| | | ||||| ||||| |||| Sbjct 17610658 TATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAA 17610717 Query 190305 TAGAGTCACAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAG 190364 || || || | ||||||| ||||| ||||| ||||| || || || || || | Sbjct 17610718 ACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGG 17610777 Query 190365 CTGCTCATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAA 190424 | ||||||||||| |||||||| |||||| || |||||||| | Sbjct 17610778 CCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTTTTAACAACTCTCGTT 17610824 Query 190425 GTTTACACTTCTTCTTAGCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAATGGGTA 190484 ||||||||||||||| | | | |||||| | | ||||| || | | |||| Sbjct 17610825 CTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTA 17610884 Query 190485 TTTGCACAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCAC 190544 || | || ||||| ||||| |||| || ||||| || ||||| |||||||||||| | Sbjct 17610885 TTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCC 17610944 Query 190545 AAGGTAAAATTGTTCCAACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 190604 ||||| || || || |||| ||| | | ||| | || || ||||||||||||| Sbjct 17610945 AAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAG 17611004 Query 190605 TAATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCT 190648 ||||||| ||| | |||| ||||||||||| |||||||||||| Sbjct 17611005 TAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCT 17611048 >seq4 Length=27574323 Score = 257 bits (284), Expect = 2e-63 Identities = 428/616 (69%), Gaps = 18/616 (3%) Strand=Plus/Minus Query 183615 ATCCTGTAACTGGCAGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAG 183674 |||| |||| ||| |||| ||| ||| ||||| ||||| ||||| |||| || | Sbjct 13711677 ATCCAATAACCGGCGGTCTATGGTTGAGCGATATTGCACACCATCATTTAGCTATTGGTA 13711618 Query 183675 TTATGTTTATCATTGCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGA 183734 || | || | || |||||||||||||| | || |||| |||||||||||| ||| Sbjct 13711617 TTCTTTTCCTGATCACAGGTCATATGTATAGGACCAACTAGGGTATTGGTCATGGCCTGA 13711558 Query 183735 AAGAGATATTAGATGGTCAGAATGG----TTTCCC--ACAGGGTGTCACACACAGAGGAT 183788 || | || || || | ||| || || ||| | |||||| || | ||| Sbjct 13711557 AAAATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGGGC------CATAAAGGTC 13711504 Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848 | |||||| | ||| || ||| | ||||| ||| |||| || || || || ||||||| Sbjct 13711503 TCTATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAG 13711444 Query 183849 GATCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTG 183908 | |||| | || | || | ||||||||||| | ||||| || |||||||| || | Sbjct 13711443 GCTCTACAACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAG 13711384 Query 183909 GTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTC 183968 || ||| ||| ||| | | || ||||| || || |||||||| || || |||| Sbjct 13711383 CTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTC 13711324 Query 183969 TTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATCCTGT-- 184026 | || || ||||| | |||||||| | ||| |||| ||||||||||| |||| Sbjct 13711323 TAATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGA 13711264 Query 184027 -TCAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTC 184085 || | | | | || |||||||| | | |||| | | ||||||||||| | Sbjct 13711263 CTCGATACAATG---ATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCC 13711207 Query 184086 ACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATG 184145 || | ||||||||||| || ||| |||||||||| ||||||||| | || ||||| |||| Sbjct 13711206 ACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATG 13711147 Query 184146 ATATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTAC 184205 ||| ||||| || || ||| | || | ||| | || ||||| || |||||||||| Sbjct 13711146 ATACCATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTAC 13711087 Query 184206 AACCTGTATTTGCACA 184221 |||| | ||||| || Sbjct 13711086 AACCGATCTTTGCTCA 13711071 Score = 199 bits (220), Expect = 5e-46 Identities = 355/516 (69%), Gaps = 2/516 (0%) Strand=Plus/Minus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATGCTCATGATT 182906 |||| || || ||| | || ||||| ||||| ||||| |||| || |||||||| |||| Sbjct 13712409 TAGCTAAGGGCCCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATT 13712350 Query 182907 TTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTG 182966 | |||| ||| | ||||| || | |||| || ||||| | ||| ||| || || | Sbjct 13712349 TCGATAGTCATACAGGTGATTTGGAGGAGATCTCTCGAAAAGTCTTTAGTGCTCATTTCG 13712290 Query 182967 CTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTT 183026 ||| | || |||||| | ||| |||| | | | ||| || ||||| | |||| Sbjct 13712289 GTCAACNCTCCATTATCTTTCTTTGGTTGAGTGGCATGTACTTCCATGGTGCCCGTTTTT 13712230 Query 183027 CAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTT 183086 | || ||| || |||| | || || ||||| | ||| ||||||| || |||| Sbjct 13712229 CCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTGGACCCAGTGCTCAGGTAGTTT 13712170 Query 183087 GGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGTGCAGGATATCAAGGTATTA 183146 |||| || | || ||||| ||||||||||| ||| || | || | | ||| || Sbjct 13712169 GGCCAATCGTAGGGCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCC 13712110 Query 183147 GAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAAC 183206 ||| || || || || |||||||| ||| |||||| || ||||| | |||| |||| Sbjct 13712109 AAATAACCTCCGGGTTTTTTCAGATTTGGCGAGCATCCGGAATAACTAGTGAATTACAAC 13712050 Query 183207 T-AATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCA 183265 | || | | ||| | ||||| || || | ||| | | ||| || |||||| Sbjct 13712049 TCTATTGTAC-CGCAATCGGTGCATTGATTTTTGCATCGTTAATGCTTTTTGCTGGGTGG 13711991 Query 183266 TTTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATG 183325 || |||| |||| || ||||| || ||| | ||||| || | |||||||| ||| || Sbjct 13711990 TTCCATTATCACAAAGCCGCTCCCAAATTAGCCTGGTTCCAAGACGTAGAATCCATGTTG 13711931 Query 183326 AATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCT 183361 ||||||||| | ||||| || | || ||||| ||| Sbjct 13711930 AATCATCACTTAGCAGGGTTATTAGGACTTGGGTCT 13711895 Score = 179 bits (198), Expect = 5e-40 Identities = 275/393 (70%), Gaps = 37/393 (9%) Strand=Plus/Minus Query 184323 TAGGTACAGCAGACTTTATGATACATCACATACACGC-TTTCCAGATTCATGTTTGTGTA 184381 |||| || ||||| ||| | | |||||||| ||||| ||| || || ||||| |||| Sbjct 13710939 TAGGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACA-ATCCATGTCACTGTA 13710881 Query 184382 TTAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACCAGATAAGAGT 184441 ||||| ||| | || |||||||||| || | | || | || ||||| ||||| || Sbjct 13710880 TTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGTTCCCGTTTGATACCCGATAA-AGC 13710822 Query 184442 AAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATC 184500 || | | || || | |||||||| ||||| ||||| |||| || || ||||| ||||| Sbjct 13710821 AAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGAACATGTCAAGTATC 13710762 Query 184501 AGGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAGTAAT 184560 | | ||||||||| ||| | ||| ||||||||||||| |||| ||| || |||| || Sbjct 13710761 CGCCTAGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCAT 13710702 Query 184561 CTTCCACTTTAGTTGGAGAATGCA---AGATGTATGGGGT-CTAT--------------- 184601 ||||| || ||||||| |||||| ||||| |||||| |||| Sbjct 13710701 TTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGT 13710642 Query 184602 --------------CAGGAGGTAACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTT 184647 |||| || |||||||| |||||||| ||||| || ||||| ||| | Sbjct 13710641 GGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCT 13710582 Query 184648 GAGAGACTTCTTATGGTCACAGTCAAGTCAAGT 184680 |||| ||||| ||| ||||| || ||||| Sbjct 13710581 TCGAGATTTCTTGTGGGCACAGGCATCCCAAGT 13710549 >seq9 Length=19219615 Score = 205 bits (226), Expect = 1e-47 Identities = 193/246 (78%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 182484 TAATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGG 182543 ||||||| || |||| ||||| |||||||| | || |||||||| |||||||| | Sbjct 15071854 TAATGTCACATTCCGTAAAAATTTATGATACACGTATAGGATGCACTCAATGTGTACGAG 15071913 Query 182544 CTTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTG 182603 |||||||| ||||||||||||||| | ||||||||||| || ||||| |||||||||| Sbjct 15071914 CTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTG 15071973 Query 182604 CTTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTA 182663 ||||| | || ||||| || |||||||| || ||||||||||| ||| | || | || | Sbjct 15071974 CTTCCGCGCCAAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTACCCAA 15072033 Query 182664 CAGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAG 182723 |||| ||||||||| | || ||||| || || | || || || | ||||||| |||| Sbjct 15072034 CAGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTAT 15072093 Query 182724 CATATT 182729 | |||| Sbjct 15072094 CTTATT 15072099 >seq8 Length=22678724 Score = 158 bits (174), Expect = 2e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 186503 TTTCTACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACAT 186562 |||| ||| ||||||||| ||||| || ||||||||||||||||| | || || ||| Sbjct 20016703 TTTCCACCGGTAGGACCTGGAGATTTCTTGGTTCATCATGCTATTGCTTTAGGTTTGCAT 20016644 Query 186563 ACTACAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCA 186622 || || || || || |||| |||| | | |||||||| ||||| ||| | || || Sbjct 20016643 ACAACTACATTGATTTTAGTAAAGGATACTTTAGATGCACTCGGTTCCAAATTAATGCCG 20016584 Query 186623 GATAAGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGT 186682 ||||| |||||||| |||||| || |||||||| |||||||| || ||||||||| Sbjct 20016583 GATAAAAAAGATTTTGGATATAGTTTTCCTTGTGACGGTCCAGGTCACGGCGGTACTTGT 20016524 Query 186683 GATAGTTCTGGTTGGGATGCTTTCTAT 186709 |||| ||||| |||||| || || ||| Sbjct 20016523 GATATTTCTGCTTGGGACGCGTTTTAT 20016497 Score = 82.4 bits (90), Expect = 1e-10 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 190586 GCAAACCTTGGTATGGAAGTAATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTA 190645 || || |||||||||||||||||||| ||| | ||||| ||||||||||| ||||||||| Sbjct 21568419 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 21568360 Query 190646 GCT 190648 ||| Sbjct 21568359 GCT 21568357 >seq2 Length=31686972 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 186950 GCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACT 187009 || || |||||||||||| | ||||| ||| | || |||||||| || |||||||||||| Sbjct 31660463 GCGACTGGATTTATGTTCTTAATTTCCTGGCGTGGATATTGGCAGGAATTAATTGAGACT 31660522 Query 187010 CTTGCTTGGGCACATCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCA 187069 | || ||||| ||| || | || || | || ||| || | ||||||||||| || Sbjct 31660523 TTAGCATGGGCTCATGAACGGACACCTTTGGCTAATTTAATTCGCTGGAGAGATAAGCCC 31660582 Query 187070 GTGGCACTTTCTATTGTTCAAGCAAGACTAGTTGGTTTATCACATTTTGCCATAGGATTT 187129 ||||| ||||| ||||| ||||||||| | || || ||| | || ||| || | || | | Sbjct 31660583 GTGGCTCTTTCCATTGTGCAAGCAAGATTGGTGGGATTAGCTCACTTTTCCGTGGGTTAT 31660642 Query 187130 GTGCTTACCTATGCACCATTCCTGATAGCAACAACAGCA 187168 | | || ||||| | ||| |||| || ||||| || Sbjct 31660643 ATATTCACTTATGCCGCTTTCTTGATTGCCTCAACATCA 31660681 Score = 100 bits (110), Expect = 4e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 190481 GGTATTTGCACAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGAT 190540 |||||| | || ||||| ||||| ||||||| ||||| || ||||| |||||||||||| Sbjct 14358952 GGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTCAACCA-TCTGTAGTTGAT 14358894 Query 190541 GCACAAGGTAAAATTGTTCCAACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATG 190600 |||||| || || || |||| ||| | | ||| | ||||| |||| |||| Sbjct 14358893 AGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAATCTTGCTATG 14358834 Query 190601 GAAGTAATGCATGAAAGAAATGCACACAAC 190630 ||||||||||| ||| | ||||| ||| || Sbjct 14358833 GAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 186503 TTTCT-ACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACA 186561 ||||| | |||||||||||| ||||| || ||||||||||||||||| | || || || Sbjct 13940481 TTTCTTAACAATAGGACCTGGAGATTTCTTGGTTCATCATGCTATTGCTTTAGGTTTGCA 13940540 Query 186562 TACTACAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAA 186613 ||| || || || || |||| |||||||| |||||||| | | ||| ||| Sbjct 13940541 TACAACTACATTGATTTTAGTAAAGGGTGCTTTAGATGCATGTGATTCCAAA 13940592 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 183615 ATCCTGTAACTGGCAGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAG 183674 |||| |||| ||| |||| ||| ||| ||||| || || ||||| |||| || || Sbjct 26874784 ATCCAATAACCGGCGGTCTATGGTTGAGCGATATTGCGCACCATCATTTAGCTATTGCTA 26874725 Query 183675 TTATGTTTATCATTGCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGA 183734 || | || | || |||||||||||||| | || ||||| ||||||||||| ||| Sbjct 26874724 TTCTTTTCCTGATCNCAGGTCATATGTATAGGACCAACTGAGGTATTGGTCATGGCCTGA 26874665 Query 183735 AAGAGATATTAGATGGTCAGAATGG 183759 |||| || || || | ||| || || Sbjct 26874664 AAGATATTTTGGAGGCTCACAAAGG 26874640 >seq12 Length=20550741 Score = 116 bits (128), Expect = 5e-21 Identities = 141/186 (76%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 184424 TTAATACCAGATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGG 184482 || ||||| ||||| || || | | || ||| | | |||||| ||||| ||||| |||| Sbjct 18025861 TTGATACCCGATAA-AGCAAATCTTGGTTTCGG-TACCCTTGCGATGGGCCTGGGCGAGG 18025918 Query 184483 AGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAA 184542 || || ||| | ||||| | ||||||||||| ||| | ||| |||||| |||||| || Sbjct 18025919 GGGAACATGTTAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTAGATGTACAA 18025978 Query 184543 TTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAGAATGCA---AGATGTATGGGGT-C 184598 || ||| || |||| || ||||| |||||||||| |||||| |||||| | || | | Sbjct 18025979 TTTCATTTCGGTAGTCATTTTCCATTTTAGTTGGAAAATGCAGTTAGATGTTTAGGCTAC 18026038 Query 184599 TATCAG 184604 ||| || Sbjct 18026039 TATAAG 18026044 Score = 113 bits (124), Expect = 6e-20 Identities = 151/208 (73%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 182524 ATGCACACAATGTGTGAAGGCTTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGG 182583 |||||| |||| ||| ||||||||| ||||||||||||||| | ||||| ||||| Sbjct 20453496 ATGCACTCAATATGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGTGATGG 20453555 Query 182584 GTGCAAAGCAAAGCAAATTGCTTCCTCACC--TAGAACTGAGGATTGTGTAGGATGTAAG 182641 || ||||| ||||| ||||||| | || ||| | ||| ||||||||| ||||| Sbjct 20453556 ATGTAAAGCCAAGCAGATTGCTTTCGTGCCAAAAGATCAAAGG-TTGTGTAGGTCGTAAG 20453614 Query 182642 AGATGTGAAACAGCATGTCCTACAGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAA 182701 ||||| ||| | | || ||| | ||||||||||| || ||||| || || | || Sbjct 20453615 AGATGCGAATTTACCTTCCCAACAAATTTTTTAAGTATCCGCGTTTATTTAGGACCTGAC 20453674 Query 182702 ACCACAAGAAGCATGGGTCTAGCATATT 182729 || || | | ||||| || | | |||| Sbjct 20453675 ACAACCCGCATCATGGCTCAATCTTATT 20453702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 186890 TTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGG 186949 ||||| ||||||| | | || |||||| | ||||||||||| ||||| ||| | |||||| Sbjct 12861812 TTTGGGATGAATAGTTTATCGGTATGGACGTGGATGTTCTTATTTGGACATCTTGTTTGG 12861871 Query 186950 GCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTA 186987 || || ||||||||||| | ||||| ||| | || || Sbjct 12861872 GCGACTNGATTTATGTTCTTAATTTCCTGGCGTGGATA 12861909 >seq3 Length=33311619 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 183148 AATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAACT 183207 ||| || || ||||| |||||||| ||| |||||| || ||||| | |||| ||||| Sbjct 23795795 AATAACCTCCGGTTTTTTTCAGATTTGGCGAGCATCCGGAATAACTAGTGAATTACAACT 23795736 Query 183208 A-ATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCAT 183266 || | | ||| | ||||| || || | ||| | | ||| || |||||| | Sbjct 23795735 CTATTGTACC-GCAATCGGTGCATTGATTTTTGCATCGTTAATGCTTTTTGCTGGGTGGT 23795677 Query 183267 TTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATGA 183326 | |||| |||| || ||||| || ||| | ||||| || | |||||||| ||| ||| Sbjct 23795676 TCCATTATCACAAAGCCGCTCCCAAATTAGCCTGGTTCCAAGACGTAGAATCCATGTTGA 23795617 Query 183327 ATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCT 183361 |||||||| | ||||| || | || ||||| ||| Sbjct 23795616 ATCATCACTTAGCAGGGTTATTAGGACTTGGGTCT 23795582 >seq11 Length=23014695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 184346 CATCACATACACGC-TTTCCAGATTCATGTTTGTGTATTAATTCTTCTCAAGGGTGTTTT 184404 ||||| || ||| | ||| || || |||| ||||| ||| | | || ||||||| Sbjct 13937649 CATCATATTCACACATTTACA-ATCTATGTGACTGTATAAATAATGTTGAAAAGTGTTTT 13937591 Query 184405 ATACTCTAGAAACTCACAATTAATACCAGATAAGAGTAAGTTAGGATTCAGATTCCCTTG 184464 || || | | || | || ||||| ||||| | || | || || | |||||||| Sbjct 13937590 ATTTGCTCGCAGTTCCCGTTTGATACCCGATAAAATAAATCTTGGTTTTTGCTTCCCTTG 13937531 Query 184465 TGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTGG 184524 ||||| ||||| ||| || || | ||| |||| | |||||| |||| ||| | | Sbjct 13937530 CGATGGGCCTGGACAAGG-GGAACATATCAAGTATTCGCCTGGGAT-ATGTTTTCTTAGA 13937473 Query 184525 TTTATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAGAATG 184582 |||||||||||| || |||| ||| || || | || ||||| || ||||||| |||| Sbjct 13937472 TTTATTCTGGATATACAATTCCATTTCGGTAATCATTTTCCATTTCAGTTGGAAAATG 13937415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631427105285920