Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 seq9 93.3 3e-14 seq4 89.7 3e-13 seq5 86.0 4e-12 >seq6 Length=25711811 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| ||||| ||||| ||| | Sbjct 22964228 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 22964169 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| || || | || || || || Sbjct 22964168 GATACAATTGACAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGCATTCCACCTGACCA 22964110 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| ||||| ||||| || || | ||||| | | |||||||| Sbjct 22964109 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 22964050 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 22964049 CATCCAGAAGGAGTCCAC 22964032 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || ||||| || |||||||| || || || ||| || Sbjct 22964000 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGAGGTCGAGTCCTCG 22963941 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | || ||| | || | || | || ||||| || || | || || || || Sbjct 22963940 GACAAGATCGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGAATTCCCCCGGACCA 22963882 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || || || || | ||| || | | |||||||| Sbjct 22963881 GCAGCGCCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAA 22963822 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || || |||||||| || || Sbjct 22963821 CATTCAGAAGGAGTCCACCTTGCA 22963798 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || || || || || ||||| || | Sbjct 23416769 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 23416828 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| || || | || || || || Sbjct 23416829 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 23416888 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || || || || | ||||| | | ||||||||| Sbjct 23416889 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 23416948 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 23416949 ATCCAGAAGGAGTCAACA 23416966 >seq9 Length=19219615 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || ||||||||||||||||| ||||| |||||||| || |||||| Sbjct 11939188 GACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGAA 11939247 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | ||||| | | ||| |||||||| || || ||||| || Sbjct 11939248 GATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 11939291 >seq4 Length=27574323 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || |||||||| | || ||||| ||| | Sbjct 24792648 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCT 24792707 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || ||| | || ||||| || Sbjct 24792708 GACACGATCGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGTATTCCACCAGACCA 24792766 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || || | ||||| | | |||||||| Sbjct 24792767 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAA 24792826 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 24792827 CATCCAGAAGGAGTCCAC 24792844 >seq5 Length=24206129 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/198 (70%), Gaps = 9/198 (5%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || | ||||| ||| | Sbjct 7377345 ATGCAGATCTTTGTGAAGACACTCACTGGCAATACCATAAG-------GTTGAGTCCTCT 7377293 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || ||| | || || | || Sbjct 7377292 GACACGATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGTATTCCACCTAACCA 7377234 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||||| || |||| |||||| | | |||||||| Sbjct 7377233 GCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGACGCACCCTCGCAGATTACAA 7377174 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 7377173 CATTCAGAAAGAGTCCAC 7377156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009550566096