Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq10 598 5e-166 seq2 120 4e-22 seq8 98.7 1e-15 >seq10 Length=19274048 Score = 598 bits (662), Expect = 5e-166 Identities = 721/978 (74%), Gaps = 17/978 (2%) Strand=Plus/Plus Query 183207 GATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCAAC 183266 ||| || ||||| | ||||| || || | || |||||||| ||||||| || || Sbjct 17610089 GATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC 17610148 Query 183267 TCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACA 183325 | ||| | ||||| |||| || || | |||||| ||||||| ||||| || || | Sbjct 17610149 CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATA 17610207 Query 183326 TCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTG 183385 | || || || || || || ||| |||| || | | || |||||||| || ||||||| Sbjct 17610208 TTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTG 17610267 Query 183386 GTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAG 183445 || | |||||||| |||| || | ||| | ||||| || || || |||||||| | Sbjct 17610268 GTACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTG 17610327 Query 183446 CATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCC 183505 |||| | ||||||||| | || || || |||||||| | || | || | |||||| Sbjct 17610328 CATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCT 17610387 Query 183506 TCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGC 183565 | |||| || || || |||||||||||||||||| || || |||||| ||||||| Sbjct 17610388 TACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGC 17610447 Query 183566 GTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGG 183625 |||||||||| |||||| ||| || |||||||| ||||| || ||||| ||| || Sbjct 17610448 GTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGA 17610507 Query 183626 TCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCT 183685 | || ||| | |||||||| ||| |||||||||||| | || || ||| || | Sbjct 17610508 TTTACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTT 17610567 Query 183686 TTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGC 183745 | |||| |||| |||| ||||| |||||||| |||||||| ||||| || || |||||| Sbjct 17610568 TCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGT 17610627 Query 183746 TGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTA 183805 | ||||| |||||||| ||||| ||||| || |||||||| ||||| |||| |||| | Sbjct 17610628 TAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAA 17610687 Query 183806 CTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTC 183864 | | || | | | || | ||||||||||| || || || | ||||||| || Sbjct 17610688 CCT-CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTT 17610746 Query 183865 GGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATC 183924 |||||||| |||||||| || || ||||| || |||||||| || ||| Sbjct 17610747 GGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATC 17610793 Query 183925 TTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCA 183984 ||||| |||||| |||||||| ||||||||| | ||||||||| | | ||||||||| Sbjct 17610794 TTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCT 17610853 Query 183985 GTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGT 184044 || || || || ||||| |||||| | ||| |||| |||||||| || || || || || Sbjct 17610854 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGA 17610913 Query 184045 TTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGAC 184104 || || |||||||| || | ||||| | |||||||| || | || || ||||| || Sbjct 17610914 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 17610973 Query 184105 GTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTC 184164 | ||||||||||| |||||| |||||||| |||||||| ||| |||||||||||||| Sbjct 17610974 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTC 17611033 Query 184165 CCTCTCGACCTTGCTGCT 184182 ||||| ||||| ||| || Sbjct 17611034 CCTCTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 120 bits (132), Expect = 4e-22 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 183994 ATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTC 184053 || ||||| |||||| | ||| |||| |||||||| || || || ||||| || || ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 184054 AACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAAC 184113 ||||| || | ||||| | |||||||| || | | || ||||| || | ||||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 184114 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAAC 184161 ||||| ||||| |||||||| |||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 186444 GCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCA 186503 ||||| || ||| ||||| | | ||| |||||||||| || || ||||||||||| ||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 186504 TTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGT 186563 || || |||||||| || || || | | || | |||||||| | || || ||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 186564 GTTACTGTAGAAAA 186577 | || || ||||| Sbjct 31659826 GCAACCGTGGAAAA 31659839 >seq8 Length=22678724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 184109 TCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTC 184168 |||||| |||| |||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 184169 TCGACCTTGCTGCT 184182 | ||||| |||||| Sbjct 21568367 TAGACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622070306689440