Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq10 567 8e-157 seq2 102 9e-17 seq8 93.3 5e-14 >seq10 Length=19274048 Score = 567 bits (628), Expect = 8e-157 Identities = 713/976 (73%), Gaps = 17/976 (2%) Strand=Plus/Plus Query 163941 TAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCC 164000 ||||| ||||| || ||| | || | || ||||| || || ||||||| |||| || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCCTACC 17610149 Query 164001 TGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACAT 164058 | | | | || ||| | ||| || || ||||||||||||| ||| ||||| || || || Sbjct 17610150 TTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATAT 17610208 Query 164059 CGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGG 164118 ||||| || || || || || ||||||| | | || |||||||| || |||||||| Sbjct 17610209 TGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGG 17610268 Query 164119 TGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGC 164178 | | || | ||| ||||| || |||| ||||||| ||||| || |||||||| || Sbjct 17610269 TACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGC 17610328 Query 164179 AAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCT 164238 | | | || || ||| | ||||| || ||||||| | || |||| | |||||| | Sbjct 17610329 ATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTT 17610388 Query 164239 GATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCG 164298 |||| | | ||| |||||||||||||||||||| || |||||| |||||||| Sbjct 17610389 ACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCG 17610448 Query 164299 TCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGT 164358 |||||||||| || ||||| || |||||||| || || || | ||| || ||| || | Sbjct 17610449 TCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGAT 17610508 Query 164359 CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTT 164418 || ||| | |||||||| ||||| ||||| |||||| | || || ||||| || || Sbjct 17610509 TTACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTT 17610568 Query 164419 CAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCT 164478 ||||| ||| | || |||||||| ||||| |||||||| ||||| || || || ||| | Sbjct 17610569 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 17610628 Query 164479 CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 164538 || ||||| ||||| || |||||||| || |||||||| ||||| |||| |||| || Sbjct 17610629 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAAC 17610688 Query 164539 TTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGG 164598 ||| || | | || ||||| ||||| || || || | ||||||| ||||| Sbjct 17610689 CTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 17610748 Query 164599 TCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTT 164658 ||| || ||||| || || || || || |||||||| ||||| || || Sbjct 17610749 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTT 17610795 Query 164659 CCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGT 164718 |||||| ||| || |||||||| ||||| | ||||||||| | | || |||||||| Sbjct 17610796 CCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGT 17610855 Query 164719 TGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTT 164778 || || || ||||| |||||| | || |||| || ||||| ||||| || ||||| || Sbjct 17610856 AGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATT 17610915 Query 164779 CAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGT 164838 ||| |||||||| || | | ||| | || ||||| || | || || ||||| || | Sbjct 17610916 CAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATAT 17610975 Query 164839 TCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCC 164898 ||||||||||| ||| || |||||||| |||||||| ||| |||||||||||||||| Sbjct 17610976 CATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCC 17611035 Query 164899 TCTCGACCTTGCTGCT 164914 ||| ||||| ||| || Sbjct 17611036 TCTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 102 bits (112), Expect = 9e-17 Identities = 124/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 164726 ATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 164785 || ||||| |||||| | || |||| || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 164786 AACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAAC 164845 ||||| || | | ||| | || ||||| || | | || ||||| || | ||||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 164846 CGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAAC 164893 ||||| ||| | |||||||| |||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 >seq8 Length=22678724 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 164841 TCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTC 164900 |||||| |||| ||| || |||||||| |||||||| |||||||||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 164901 TCGACCTTGCTGCT 164914 | ||||| |||||| Sbjct 21568367 TAGACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557654316351840