Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq10 571 7e-158 seq2 111 2e-19 seq8 104 3e-17 >seq10 Length=19274048 Score = 571 bits (632), Expect = 7e-158 Identities = 713/975 (73%), Gaps = 17/975 (2%) Strand=Plus/Plus Query 177618 CACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGC 177677 |||| | || ||||| || | || ||||| ||||| ||||||||||||| | | | Sbjct 17610098 CACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 17610157 Query 177678 TGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCA 177736 || || ||||| || || |||| ||| ||||||| ||||| || || || || || | Sbjct 17610158 CGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTA 17610216 Query 177737 TCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTG 177796 | ||||| || || ||||||| | | || || ||||| || || |||||| | ||| Sbjct 17610217 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTG 17610276 Query 177797 TTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCG 177856 ||||| ||||| || | || | ||||| || || || |||||||| || ||| | | Sbjct 17610277 TTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 17610336 Query 177857 ATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTA 177916 |||||||| | |||||||| ||||||| | || || | | |||||| | | ||| Sbjct 17610337 ATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 17610396 Query 177917 TCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGA 177976 | | || |||||||||||||||||||| || ||| || ||||||||||| |||| Sbjct 17610397 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 17610456 Query 177977 TCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTT 178036 | ||| ||||| || ||||| || || || || ||||||| ||| | |||| ||| Sbjct 17610457 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTA 17610516 Query 178037 TCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACA 178096 | |||||||| ||||| ||| | |||||| | || || ||| || ||||||| | Sbjct 17610517 TTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 17610576 Query 178097 TGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCG 178156 || |||| ||||| |||||||| |||||||| ||||| || || |||||||| || || | Sbjct 17610577 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 17610636 Query 178157 CTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGC 178216 ||||||| || || ||||| || |||||||| ||||| |||| |||| || | || | Sbjct 17610637 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCT-CTAGT 17610695 Query 178217 TGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAA 178275 | | || | |||||||| || |||||| | || | ||||||| || |||||||| Sbjct 17610696 TTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAG 17610755 Query 178276 GAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATAC 178335 |||||||| || || || || || ||||||||||| ||||||||||| Sbjct 17610756 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATAT 17610802 Query 178336 GCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGT 178395 || || |||||||| ||||| | ||||||||| | | || |||||||| || || Sbjct 17610803 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGG 17610862 Query 178396 ATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 178455 || |||||||||||| | ||| |||| || ||||| ||||| || ||||| ||||| ||| Sbjct 17610863 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTC 17610922 Query 178456 AACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAAC 178515 ||||| || | | ||||| || || || | || || ||||| || | ||||| Sbjct 17610923 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 17610982 Query 178516 CGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGAC 178575 |||||| ||||||||||||||| |||||||| ||| ||||||||||||||||||| ||| Sbjct 17610983 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGAC 17611042 Query 178576 CTCGCTGCTGCTGAA 178590 || ||| || |||| Sbjct 17611043 CTAGCTACTCTTGAA 17611057 >seq2 Length=31686972 Score = 111 bits (122), Expect = 2e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 178396 ATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 178455 || |||||||||||| | ||| |||| || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 178456 AACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAAC 178515 ||||| || | | ||||| || || || | | || ||||| || | ||||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 178516 CGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAAC 178563 ||||| ||||| ||||||||| |||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 >seq8 Length=22678724 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 178511 TCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTC 178570 |||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 178571 TTGACCTCGCTGCTGCTGAA 178590 | ||||| |||||| |||| Sbjct 21568367 TAGACCTAGCTGCTCTTGAA 21568348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596307110553920