Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq10 538 4e-148 seq8 98.7 1e-15 seq2 96.9 4e-15 >seq10 Length=19274048 Score = 538 bits (596), Expect = 4e-148 Identities = 698/967 (72%), Gaps = 13/967 (1%) Strand=Plus/Plus Query 169372 CACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGC 169431 ||| || |||||||| || | || ||||| || || |||||||||| | | || | Sbjct 17610098 CACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 17610157 Query 169432 AGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCAT 169491 ||||| || || || ||||||||||||| ||| || || || || || || || || Sbjct 17610158 CGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217 Query 169492 CCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 169551 || || || ||| |||||||| | | || || ||||| || ||||||||| | |||| Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277 Query 169552 GCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGA 169611 || |||| || |||| | ||||| || || || |||||||| ||| | | || Sbjct 17610278 TCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 17610337 Query 169612 TGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCAT 169671 ||| ||||| ||||| || ||||||| | || |||| | |||||| | | || | Sbjct 17610338 TGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 17610397 Query 169672 CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGAT 169731 | ||| |||||||||||||||||| || | |||||||||||||| |||||||| Sbjct 17610398 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 17610457 Query 169732 CTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTT 169791 |||||| || || ||||| ||||| || || | ||||||||| || | ||||| | Sbjct 17610458 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 17610517 Query 169792 TGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACAT 169851 ||| ||||| |||| ||| | ||||||| | || || || || || || |||| || Sbjct 17610518 TGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 17610577 Query 169852 GCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGC 169911 | | || ||||| || ||||| |||||||| ||||| || || |||||| | ||||| || Sbjct 17610578 GATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 17610637 Query 169912 GGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCT 169971 || || || || || || || || || || ||||| ||| || | || || || ||| | Sbjct 17610638 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTT 17610697 Query 169972 TGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGA 170031 || | |||||||| || ||||| || || | ||||||| || |||||||| || Sbjct 17610698 GATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGA 17610757 Query 170032 AGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGC 170091 |||||| || || || || |||||||| ||||| ||||||||||| || Sbjct 17610758 AGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGC 17610804 Query 170092 TTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCAT 170151 | || |||||||| ||||| | ||||||||| | | || |||||||| || || || Sbjct 17610805 TAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGAT 17610864 Query 170152 CTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAA 170211 |||||||| ||| | ||| | || ||||| ||||| || ||||| ||||| ||||| Sbjct 17610865 TTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAA 17610924 Query 170212 CCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCG 170271 ||| || | | ||| | || ||||| || | || || ||||| || | ||||||| Sbjct 17610925 CCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCG 17610984 Query 170272 TGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCT 170331 |||| |||||| |||||||| |||||||| ||| ||||||||||||||||||| ||||| Sbjct 17610985 TGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCT 17611044 Query 170332 CGCTGCT 170338 ||| || Sbjct 17611045 AGCTACT 17611051 >seq8 Length=22678724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 170265 TCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTC 170324 |||||| |||| |||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 170325 TCGACCTCGCTGCT 170338 | ||||| |||||| Sbjct 21568367 TAGACCTAGCTGCT 21568354 >seq2 Length=31686972 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 170150 ATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTC 170209 || |||||||| ||| | ||| | || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 170210 AACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAAC 170269 ||||| || | | ||| | || ||||| || | | || ||||| || | ||||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 170270 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAAC 170317 ||||| ||||| |||||||| |||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592198311170240