Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 147 5e-30 seq5 107 4e-18 seq1 107 4e-18 seq22 104 5e-17 seq12 104 5e-17 seq10 104 5e-17 seq9 104 5e-17 seq8 104 5e-17 seq3 104 5e-17 >seq6 Length=21794218 Score = 147 bits (162), Expect = 5e-30 Identities = 310/455 (68%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| ||||| |||| | ||||| || || || | || || || ||| Sbjct 6278968 TTCGCCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 6278909 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 6278908 TGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGAG 6278849 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| || || | |||| | || | || ||| Sbjct 6278848 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 6278789 Query 230353 CAGAACAAGCTACCATTCGAGA--CG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| || ||| | ||| || | || || || || | | Sbjct 6278788 CGCGGCAAGCT-CGA--CGAGGTCCGCGTCCGCGAGATCGTTGCCGACGCCGTCGACATC 6278732 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | ||||||| | || ||||| | || ||||| || | |||||||||| || || Sbjct 6278731 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACCT 6278673 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| ||||||||| | | | || || || | | |||| Sbjct 6278672 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCCCTGGGCTGCAAGAA 6278613 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| ||||| || | | ||||||||||| || || || || ||||| Sbjct 6278612 GATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 6278553 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| ||| | ||||| |||| Sbjct 6278552 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 6278518 Score = 140 bits (154), Expect = 7e-28 Identities = 306/454 (67%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 907227 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 907286 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 907287 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 907346 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| ||||| | |||| | || | || ||| Sbjct 907347 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTATACGACCTCCTC 907406 Query 230353 CAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACG 230410 | |||||| || | || | ||| | ||| | | || || || || | || Sbjct 907407 CGCGGCAAGCTCGACGAGTCCCGC--GTCCGCGAGATCGTCGCCGACGCCGTCGACATCG 907464 Query 230411 AAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTT 230469 | | ||| ||| | || ||||| | || ||||| || | |||||||||| || || Sbjct 907465 AGAGGGAATTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACCTC 907523 Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| | ||||||||||| ||||| ||||||||| | | | || || || | | |||| Sbjct 907524 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCAAGAAG 907583 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 ||||||| ||||| || | | ||||||||||| || || || || |||||| Sbjct 907584 ATGTACAAGGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 907643 Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||||||| ||||| ||| | ||||| |||| Sbjct 907644 AACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 907677 >seq5 Length=20131956 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 14545374 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 14545315 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 14545314 GCCCCACGGTGGGC 14545301 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17017640 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17017581 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17017580 CCCACGGTGGGC 17017569 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17338451 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17338392 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17338391 CCCACGGTGGGC 17338380 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||| ||||||||| || || |||| || ||||||||||||||| Sbjct 9595249 CTAGCCCGTCTAGCTCAGTCCGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 9595190 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 9595189 AGCCCCACGGTGGGC 9595175 >seq1 Length=33916305 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 32979457 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 32979398 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 32979397 GCCCCACGGTGGGC 32979384 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 22905309 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22905368 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22905369 CCCACGGTGGGC 22905380 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 23674454 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23674513 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23674514 CCCACGGTGGGC 23674525 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || |||||||||||||||||||||||| || || |||| | |||||||||||||||||| Sbjct 27887606 GCTCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACGTTGTGGTCGTGGGTTCGAGC 27887665 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27887666 CCCACGGTGGGC 27887677 >seq22 Length=92752 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 25330 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25271 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25270 CCCACGGTGGGC 25259 >seq12 Length=15318893 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12435434 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12435493 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12435494 CCCACGGTGGGC 12435505 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12680115 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12680056 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12680055 CCCACGGTGGGC 12680044 >seq10 Length=14643570 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 9686253 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9686194 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9686193 CCCACGGTGGGC 9686182 >seq9 Length=14105664 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5368787 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5368728 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5368727 CCCACGGTGGGC 5368716 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 6532518 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6532577 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6532578 CCCACGGTGGGC 6532589 >seq8 Length=18224760 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 11423455 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11423514 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11423515 CCCACGGTGGGC 11423526 >seq3 Length=29620734 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 14593834 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14593893 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14593894 CCCACGGTGGGC 14593905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057790238555330