Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 107 4e-18 seq2 86.0 1e-11 >seq6 Length=21794218 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 6278522 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 6278581 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||||||||||||| |||||||| ||| | | | ||||| | || | Sbjct 6278582 CCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGCAGCCCAGGGCCATGAGGAGGCG 6278641 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 6278642 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 6278701 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 6278702 GGGGAGCGC 6278710 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 907673 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 907614 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| ||||||| ||| | | | || ||| | ||| | Sbjct 907613 CCAGTCGAACGGGTTGGCGACCTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAGGCG 907554 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 907553 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 907494 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 ||| |||| || || | | |||||| | ||| Sbjct 907493 GGGGAGCG-CGTCGCAGACGAATTCCCTCTC 907464 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | ||||| |||||| || ||||||| || || ||| | || || Sbjct 2574908 GACTTCGATTATGACTACTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCTTGAAGCTT 2574967 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||| | | | || ||| | ||||||||||| ||| |||| | || || || ||| Sbjct 2574968 GGTGGGAGGGTTGTTGAAAGGCCGCAGCACATGTTAATGAGAGTTTCAGTGGGAATACAC 2575027 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||||| ||| || || | || || || | | ||| | | || ||| | || Sbjct 2575028 AAGGATGACATTGAGTCCGCTATCAAAACCTATCATCTG-ATGTCTCAGCGATGGTTTAC 2575086 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| |||| || || |||||||| || || Sbjct 2575087 TCATGCTTCACCAACTCTTTTCAACGCTGGCAC 2575119 >seq2 Length=27082872 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || |||| |||| ||| || || || |||| ||| ||||| | || Sbjct 25695441 CAGAGATTTTGACTATGATTATTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 25695500 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || || || ||| | ||| |||| || | ||||| Sbjct 25695501 AGTTGGTGGAAAGGTTGTGGAAAGACCACAACATATGCTAATGAGAGTTTCTATTGGGAT 25695560 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | || ||| ||| | | |||||| Sbjct 25695561 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACATACCATATGATGTCTCAGCGCTGG 25695618 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| |||| || || ||||| || || || Sbjct 25695619 TTTACTCATGCTTCACCAACCCTTTTCAATGCTGGCAC 25695656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073732129738688