Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-25 seq1 114 1e-20 seq4 104 2e-17 seq2 102 6e-17 seq9 96.9 3e-15 seq6 95.1 1e-14 >seq5 Length=20131956 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||| ||||||||| || ||| | |||||| Sbjct 16284671 ACCAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGGCCATCGTCC 16284612 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| |||||| ||||| ||||| | || ||||||||| Sbjct 16284611 AGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 16284552 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| ||||| |||||| Sbjct 16284551 ATCTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAGAGTAATGGTCTTG 16284492 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| |||||||| |||||| Sbjct 16284491 CCTGTGAGAGTCTTGACAAAGATCTGCATG 16284462 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| |||| || Sbjct 2691986 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCG 2691927 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 2691926 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 2691867 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||||||||| || || ||||| Sbjct 2691866 ATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTC 2691807 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||| ||| Sbjct 2691806 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 2691774 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || | |||| || || || Sbjct 16284210 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCTGCCGTCCTCGAGCTG 16284151 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| ||||| || |||| ||||| ||||| || || | |||||||||||| || || Sbjct 16284150 TTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 16284091 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | |||||| | | | | || ||||||||| | ||| || ||||| || || Sbjct 16284090 TGCCTTAACATTGTCAATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTTCCAGT 16284031 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||||||| Sbjct 16284030 CAAGGTCTTGACAAAGATTTGCATG 16284006 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| ||||| | | || | ||| || || ||||||||| ||||||||||| Sbjct 16284462 GCCACCCCTCAAGCGGAGCACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 16284403 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || ||||| || | | ||| || || || || Sbjct 16284402 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGTCTCTGCTGATCTGGGGG 16284343 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || ||| ||| || | | | |||| | ||| || Sbjct 16284342 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAAC 16284283 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | |||||| |||||||| || |||||||| || || |||||||| Sbjct 16284282 CTCGAGGGTAATAGTCTTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 16284235 >seq1 Length=33916305 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| |||| || Sbjct 9799268 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCG 9799327 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 9799328 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGG 9799387 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||||||||| || || ||||| Sbjct 9799388 ATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTC 9799447 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||| ||| Sbjct 9799448 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 9799480 >seq4 Length=21479432 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| ||||| ||||| || |||| | || || || || Sbjct 18578842 GTGCAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGACCATCCTCGAGCTG 18578783 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | || ||||||||| || || Sbjct 18578782 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTT 18578723 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||||| ||| || |||||||| || Sbjct 18578722 GGCCTTCACGTTGTCGATGGTGTCCGATGACTCGACCTCCAAGGTGATGGTCTTGCCAGT 18578663 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||| |||||||||||| Sbjct 18578662 GAGGGTCTTCACGAAGATTTGCATG 18578638 >seq2 Length=27082872 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || | || ||| Sbjct 2372856 ACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCCTCC 2372915 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 2372916 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 2372975 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | ||| || |||| || || ||||| Sbjct 2372976 ATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAAGTGATGGTCTTC 2373035 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||| ||||| Sbjct 2373036 CCAGTCAATGTCTTCACAAAGATCTGCAT 2373064 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| | | || ||||| || || || ||||| Sbjct 2373785 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAA 2373844 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | |||||||||||| || || ||| || Sbjct 2373845 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 2373904 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||||||| | ||| || |||||||| ||||||||||| || Sbjct 2373905 GTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTTAC 2373964 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 2373965 GAAGATCTGCATG 2373977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || | | || || || || || || || || Sbjct 2373558 TCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAG 2373617 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||| ||||| | |||||||||||| || || ||| || Sbjct 2373618 ATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTG 2373677 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | |||||||| | ||| || |||||||||||||||||||| || Sbjct 2373678 TCAATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACG 2373737 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 2373738 AAGATCTGCATG 2373749 >seq9 Length=14105664 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | || | |||||||| || || ||||||||||||||||||||| Sbjct 7866252 GCCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGC 7866193 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 |||| ||| | || |||| || || || ||||||||||| ||||| || || ||||| Sbjct 7866192 CAGTGTGCGTCCATCCTCCAACTGCTTGCCAGCGAATATCAAACGCTGCTGATCTGGAGG 7866133 Query 45229 CACACCCTCCTTGTCC 45244 | |||||||||||| Sbjct 7866132 GATCCCCTCCTTGTCC 7866117 >seq6 Length=21794218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| || | || | |||| ||| || ||| |||||||| ||||||||||| | Sbjct 19646625 CCACCCCTGAGCCTGAGCACCAGGTGGAGGGTGGATTCCTTCTGTATGTTGTAGTCAGCC 19646566 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || || ||||| || || | ||||| ||||| || || Sbjct 19646565 AGTGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGG 19646506 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCAC 45288 | ||||||||||||| || || ||| | || | || | ||||| ||| || Sbjct 19646505 ATACCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATCGTGTCCGAGGACTCGAC 19646447 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || || |||||||| || || ||||| || ||||| |||||| Sbjct 19646446 CTCAAGTGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATG 19646398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395063205887311