Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 2e-14 seq2 82.4 1e-10 >seq6 Length=21794218 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || | ||||| || |||||||| Sbjct 6278808 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGG 6278867 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||||||| ||||| || ||||| || |||| ||| || || || |||||| Sbjct 6278868 CCCGGCATTAGGCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 6278927 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAA 33726 || || || || || ||||||| Sbjct 6278928 ATGCCCTCGACACAGGCGAAGGCAA 6278952 >seq2 Length=27082872 Score = 82.4 bits (90), Expect = 1e-10 Identities = 97/128 (76%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 ||| || | ||| || || || ||||||||||| || || || || || ||| |||| || Sbjct 25697215 AATGAAAGTGTCTGCCAAGCCCTGAACACCAATTCCAATTGGCCTGTGCCTCATATTTGA 25697156 Query 62816 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC--- 62871 | | || ||| || ||||||||||||| |||| || |||||||||||||||| Sbjct 25697155 TCTCTTTGCAGTCTC-AACAGGATAATAATTAGTATCAATTATTTTATTGAGATTTCTTG 25697097 Query 62872 TGACAATT 62879 |||||||| Sbjct 25697096 TGACAATT 25697089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797989054480