Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 2e-14 seq2 87.8 2e-12 >seq6 Length=21794218 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| || |||||||| | || | |||||||| |||||||| Sbjct 6278808 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGG 6278867 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||||||||| ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 6278868 CCCGGCATTAGGCCGCGCTTCTTTAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 6278926 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAA 36302 || || || || || ||||||| Sbjct 6278927 GATGCCCTCGACACAGGCGAAGGCAA 6278952 >seq2 Length=27082872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 65549 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608 ||| || | |||||| || || ||||||||||| || || || || || ||| |||| || Sbjct 25697215 AATGAAAGTGTCTGCCAAGCCCTGAACACCAATTCCAATTGGCCTGTGCCTCATATTTGA 25697156 Query 65609 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC--- 65664 | | || ||| || ||||||||||||| |||| || |||||||||||||||| Sbjct 25697155 TCTCTTTGCAGTCTC-AACAGGATAATAATTAGTATCAATTATTTTATTGAGATTTCTTG 25697097 Query 65665 TGACAATT 65672 |||||||| Sbjct 25697096 TGACAATT 25697089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658152306144440