Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq2 98.7 1e-15 seq6 93.3 4e-14 >seq5 Length=20131956 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCT 139619 ||||| || ||||| || || ||||| || || ||| | || || ||| ||||||| Sbjct 16284210 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCTGCCGTCCTCGAGCT 16284152 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 |||| || ||| |||||||||| ||||| || || || ||||| || ||||| ||| | Sbjct 16284151 GTTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 16284092 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 || || | | || | || |||| || ||||||||||| ||| | ||||| || | Sbjct 16284091 TTGCCTTAACATTGTCAATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTTCCAG 16284032 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 |||| || || || || |||||||| Sbjct 16284031 TCAAGGTCTTGACAAAGATTTGCAT 16284007 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| || || || || || || |||||||| || ||| Sbjct 16283975 GTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCGAGCTGCTTGCCA 16283916 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||||||||| || || || || || || ||||| ||| || || Sbjct 16283915 GCGAAGATGAGACGTTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 16283856 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || ||| ||||||| ||| | |||||||| || | || Sbjct 16283855 ACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGTGTC 16283796 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 16283795 TTCACAAAGATCTGCAT 16283779 >seq2 Length=27082872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| || | || || || |||||||| || ||| Sbjct 2373324 GTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCATCCTCGAGCTGCTTGCCA 2373383 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || |||||||| ||||| ||| || || Sbjct 2373384 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 2373443 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||||| ||| | ||||||||||||| || Sbjct 2373444 ACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTC 2373503 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 2373504 TTGACGAAGATCTGCAT 2373520 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || | || || ||| || ||||| || || Sbjct 2374008 GTTGACTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCG 2374067 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| |||||||| || || ||||| || ||||| ||| || || Sbjct 2374068 GCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 2374127 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||| | ||| | ||||||||||||| || Sbjct 2374128 ACGTTATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGTGTC 2374187 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 2374188 TTCACAAAGATCTGCAT 2374204 >seq6 Length=21794218 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || || ||||| || || || |||| || || ||||| || ||| Sbjct 19646139 GTAGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 19646080 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 19646079 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 19646020 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||||| || | ||||||||||||| ||| Sbjct 19646019 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTT 19645960 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 19645959 TTGACGAAGATCTGCATACCT 19645939 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || || || |||| || || ||||| Sbjct 19645918 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTG 19645859 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||| ||||| ||||| || || || ||||| || ||||| ||| || Sbjct 19645858 CTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 19645799 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | || || | || ||||||||||| ||| | ||||||||||| Sbjct 19645798 GGCTTTGACGTTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 19645739 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || || || || ||||| Sbjct 19645738 GAGTGTCTTCACAAAAATCTGCAT 19645715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048553807200