Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-21 seq2 86.0 9e-12 >seq6 Length=21794218 Score = 116 bits (128), Expect = 5e-21 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| |||||||| Sbjct 6278808 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGG 6278867 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||||||||| ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 6278868 CCCGGCATTAGGCCGCGCTTCTTTAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 6278926 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| |||||||| || | ||| Sbjct 6278927 GATGCCCTCGACACAGGCGAAGGCAACGAGGCGCTC 6278962 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || || || || | || || ||||| || ||||||||| | ||||| |||| Sbjct 2575120 AGTGCCAGCGTTGAAAAGAGTTGGTGAAGCATGAGTAAACCATCGCTGAGACATCAGATG 2575061 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 || || | ||||| || || || || | ||| || ||||| || | || | ||||| Sbjct 2575060 ATAGGTTTTGATAGCGGACTCAATGTCATCCTTG-TGTATTCCCACTGAAACTCTCATTA 2575002 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||| || |||||||| | | | | | ||||| | |||||| | |||| Sbjct 2575001 ACATGTGCTGCGGCCTTTCAACAACCCTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 2574942 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || |||||||| |||| || ||||| | || ||||| || Sbjct 2574941 GAGTCTTGAAACCAAAGTAGTCATAATCGAAGTCCCTATCATAAATTAT 2574893 >seq2 Length=27082872 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| | || Sbjct 25695657 AGTGCCAGCATTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGCGCTGAGACATCATATG 25695598 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | ||||| ||||| ||||| | ||| || || || | | || | ||||| Sbjct 25695597 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 25695539 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| || || |||||||| || | ||| | | ||| |||| |||||| | || | Sbjct 25695538 GCATATGTTGTGGTCTTTCCACAACCTTTCCACCAACTTTTAACAGATAAGATCTCTCAA 25695479 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || |||||||||||||| | || ||| |||| || ||||| || Sbjct 25695478 GGGTCTTAAAACCAAAATAATCATAGTCAAAATCTCTGTCATAAATTAT 25695430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718246434905240