Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 2e-14 seq2 91.5 2e-13 >seq6 Length=21794218 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||||||||| ||||| || | || | |||||||| |||||||| Sbjct 6278808 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGG 6278867 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||||||||| ||||| || ||||| || || | |||| || || || || ||||| Sbjct 6278868 CCCGGCATTAGGCCGCGCTTCTTTAGCCAGAAGAT-GGCGCAGAAGGAGCCCGAGAAGAA 6278926 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAA 42209 ||| || || || || ||||||| Sbjct 6278927 GATGCCCTCGACACAGGCGAAGGCAA 6278952 >seq2 Length=27082872 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| | || Sbjct 25695657 AGTGCCAGCATTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGCGCTGAGACATCATATG 25695598 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||||| ||||| ||||| | ||| ||||| || | | || | ||||| Sbjct 25695597 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 25695539 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||||| || |||||||| || | ||| | | ||| |||| || ||| | || | Sbjct 25695538 GCATATGTTGTGGTCTTTCCACAACCTTTCCACCAACTTTTAACAGATAAGATCTCTCAA 25695479 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || |||||||||||||| | || ||| |||| || ||||| || Sbjct 25695478 GGGTCTTAAAACCAAAATAATCATAGTCAAAATCTCTGTCATAAATTAT 25695430 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 ||| || | |||||| || || ||||| ||||| || || || ||||| ||| |||| || Sbjct 25697215 AATGAAAGTGTCTGCCAAGCCCTGAACACCAATTCCAATTGGCCTGTGCCTCATATTTGA 25697156 Query 71571 AATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 71627 | | || ||| || ||||||||||||| |||| || ||||||||||||||||| Sbjct 25697155 TCTCTTTGCAGTCTC-AACAGGATAATAATTAGTATCAATTATTTTATTGAGATTTCT 25697099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671118302403160